This seems to be lost ??
/y/programs/xtal/coot/coot-Linux-i386-fedora-10-gtk2-python/share/coot/python
reads pdb and says:
...
INFO:: NCS chain comparison 306/307
INFO:: NCS chain comparison 304/307
INFO:: NCS chain comparison 306/307
INFO:: NCS chain comparison 305/307
INFO:: NCS chain comparison 306/307
INFO:: fill_ghost_info Constructed 5 ghosts
Ghost 0 name: "NCS found from matching Chain B onto Chain A"
Ghost 1 name: "NCS found from matching Chain C onto Chain A"
Ghost 2 name: "NCS found from matching Chain D onto Chain A"
Ghost 3 name: "NCS found from matching Chain E onto Chain A"
Ghost 4 name: "NCS found from matching Chain F onto Chain A"
Molecule 0 read successfully
then reads some monomers
...
then
NCS_controller display chain toggled for imol 0 chain 1 state 1
%%%% ncs_control_display_chain
There are 5 ghosts
ighost: 0
name: "NCS found from matching Chain B onto Chain A"
chainid: B
target chain id: A
display_it_flag 1
ighost: 1
name: "NCS found from matching Chain C onto Chain A"
chainid: C
...
then when I try to display it:
INFO:: NCS chain comparison 306/311
First atom of 2340 in first selection 1/D/501/1PE/ OH2 altLoc :: segid
:D: pos: (43.244,-35.506,-4.711) B-factor: 18.28
First atom of 2316 in second selection 1/A/501/1PE/ OH2 altLoc :: segid
:A: pos: (-4.313,-18.187,34.044) B-factor: 21.72
WARNING:: no points to do matching
find_ncs_matrix returns (LSQ)
| 0, 0, 0|
| 0, 0, 0|
| 0, 0, 0|
( 0, 0, 0)
WARNING:: Junk NCS matrix
No NCS matrix defined
Admittedly the pdb begins with the ligand numbered 501 then goes back to
1 2 3 etc..
Has that upset it??
Eleanor
