On Fri, 11 Mar 2011 20:41:16 +0000
Alex Soares <soa...@bnl.gov> wrote:
> We upgraded to fedora 14, and the built in coot that is in fedora 14
> does not work properly. We have ccp4 6.1.3.
>
> Error when try to mutate residue range:
>
> (mutate-residue-range 0 "A" 1 2 "AA")
> ((safe_scheme_command) Error in proc: key: unbound-variable args:
> (#f Unbound variable: ~S (mutate-residue-range) #f))
> (update-go-to-atom-window-on-changed-mol 0)
>
This works for me - maybe COOT_SCHEME_DIR was changed somehow, or is
being overwritten by your ccp4 install?
> Error when try to open mtz file with no phases in it:
>
> Error in proc: key: unbound-variable args: (#f Unbound variable:
> ~S (refmac-for-phases-and-make-map) #f))
> (calc-phases-generic
> /img03/data1/pxuser/staff/Soares_x29_Mar11/test_3/1/Solve/output.mtz)
>
> Error when try to run refmac:
>
> sys:1: GtkWarning: IA__gtk_label_set_text: assertion `GTK_IS_LABEL
> (label)' failed /usr/bin/coot: line 56: 28477 Segmentation fault
> (core dumped) $coot_real $* ERROR: no code for module (gtk gdk)
>
both of these are known issues that (I think) Paul has changed/fixed in
later builds that don't require guile-gtk/guile-gui (since they're
deprecated packages that fedora won't support). I'll try to have a new
build available soon. If its really critical stuff, you may want/need
to stick with Paul's builds for now.
Hope this helps!
-Tim
--
---------------------------------------------------------
Tim Fenn
f...@stanford.edu
Stanford University, School of Medicine
James H. Clark Center
318 Campus Drive, Room E300
Stanford, CA 94305-5432
Phone: (650) 736-1714
FAX: (650) 736-1961
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