On Mon, Dec 5, 2011 at 3:17 AM, Tim Gruene <[email protected]> wrote: > could you first explain why you display hydrogens in coot? Usually > hydrogens are used in refinement in riding (calculated) positions and > not saved to the PDB file, so there should not be any for coot to display.
This is only true for Refmac - phenix.refine does not remove atoms from the output model. -Nat
