Thanks Bernhard.. I replaced the refmac.scm from r4648 to the one from my running coot installation and it did the trick.Refmac now updates the active map for refinement to the one it calculates.
I did: cp /home/hari/coot-read-only//scheme/refmac.scm /home/hari/autobuild/coot-Linux-x86_64-ubuntu-10.04.4-gtk2-python/share/coot/scheme/refmac.scm On a related note..I do have the following setting (set-keep-map-colour-after-refmac 1) in my .coot file , but it does not seem to be getting picked up and the refmac produced map color does change after the run and the . I am running coot version 0.7.1-pre (revision 4549) [with guile 1.8.8 embedded] [with python 2.7.0 embedded] My setting /home/hari/.coot reads.. (set-keep-map-colour-after-refmac 1) Any ideas on what I am doing wrong. Thanks again Hari On Tue, May 21, 2013 at 5:31 AM, Bernhard Lohkamp <bernhard.lohk...@ki.se>wrote: > > Hi Hari, > > sorry for getting back late. There was indeed a bug (in the scheme > scripting). This is fixed in r4647 (just downloading refmac.scm from the > repository should be ok). > > B > > > Hi all, > > I generally run refmac from inside coot. > > > > The "older" coot version would automatically pick the newest maps that > > resulted from refmac as the map to use for refinement..so it would go > > from one FWT map (say map 0) to the newest FWT (map 2) map that > > resulted after refmac.. > > > > However the auto picking of the newest map is no longer happening > > > > Is there someplace in the .coot settings file I can use to set the old > > coot behavior and I am hoping that there is a setting that will pick the > > newest map as the one to be used. > > > > Thanks for your help > > > > Hari > > > > > > > -- > *************************************************** > > Dr. Bernhard Lohkamp > Assistant Professor > Div. Molecular Structural Biology > Dept. of Medical Biochemistry and Biophysics (MBB) > Karolinska Institutet > S-17177 Stockholm > Sweden > > phone: (+46) 08-52487651 > fax: (+46) 08-327626 > email: bernhard.lohk...@ki.se >
