Thank you Paul. I was kindly provided with a script that I can use with Coot’s 'run script' function. I’ll see how that turns out.
Best wishes, Noor > On 10 May 2018, at 20:49, Paul Emsley <pems...@mrc-lmb.cam.ac.uk> wrote: > > > On 08/05/18 18:21, Noor Agip wrote: >> >> I am trying to use the 'align and mutate’ feature in coot, in order to >> place the sequence of a subunit in a solved structure (the homologous >> subunit), and initially it looks like its working, but the numbering >> of the sequence seems off. Now the protein is 118 residues instead of >> 115. > > Oh dear, that does sound like a bug. Possibly not though, it is intended > that the align and mutate feature will do deletions also. > >> Does anyone know how to deal with this particular problem? My protein >> has ~8000 residues in total, and I prefer not to mutate (the ones that >> require mutating) individually. >> > > The scripting interface in coot is quite extensive so you can probably > avoid a lot of clicking with a bit of scheme or python. > > Paul. >
