Re: [COOT] Problem with "FLEV this residue"

[Paul Emsley]

On 25/05/2018 15:26, Emilia C. Arturo (Emily) wrote:
" oops failure to construct rdkit molecule"

Hi Emily,

This is indeed the issue here. Coot needs to be able to convert your ligand from pdb/mmCIF representation 
into an internal/rdkit molecule. It won't be able to do this if there is no dictionary or the dictionary is 
not consistent with the PDB file (or vice versa, more pertinently). Can you get the thumbnail chemical 
diagram for your ligand?

Regards,

Paul.