Thank you very much to Huw Jenkins and Chris Richardson: Huw Jenkins <h.t.jenk...@me.com> Chris Richardson <chris.richard...@icr.ac.uk>
All my OpenGL apps work properly running on XQuartz to my Mac: coot, PyMol, Chimera, and Phenix Here is the combination of directions from Huw and Chris, >From the Mac terminal or iTerm2 Mac login run: defaults write org.macosforge.xquartz.X11 enable_iglx -bool true The website supplied by Chris (Re-enabling INdirect GLX on your X server): https://www.visitusers.org/index.php?title=Re-enabling_INdirect_glx_on_your_X_server Force quit XQuartz and reconnect. This allows apps like Chimera, PyMol, coot, and OpenGL apps to display properly. Best regards, -Darin Darin S. Lory On Mon, May 20, 2019 at 6:32 PM Darin Lory <darin.l...@gmail.com> wrote: > Coot-Gurus, > > i downloaded and installed both the > coot-Linux-x86_64-scientific-linux-7.5-pre-release-gtk2-python and > coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python pre-compiled > binaries to run a RHEL 7.6 server. > > I read through the FAQ > https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot-faq.html > > version coot-Linux-x86_64-scientific-linux-7.5-pre-release-gtk2-python: > > $ ./coot > ::: DYLD_FALLBACK_LIBRARY_PATH is > INFO:: Reading coordinate file: > /apps/packages/coot-installer/coot-Linux-x86_64-scientific-linux-7.5-pre-release-gtk2-python/share/coot/standard-residues.pdb > PDB file > /apps/packages/coot-installer/coot-Linux-x86_64-scientific-linux-7.5-pre-release-gtk2-python/share/coot/standard-residues.pdb > has been read. > Spacegroup: P 1 > > (coot-bin:20503): Gdk-ERROR **: 22:21:44.358: The program 'coot-bin' > received an X Window System error. > This probably reflects a bug in the program. > The error was 'BadValue (integer parameter out of range for operation)'. > (Details: serial 321 error_code 2 request_code 149 minor_code 3) > (Note to programmers: normally, X errors are reported asynchronously; > that is, you will receive the error a while after causing it. > To debug your program, run it with the --sync command line > option to change this behavior. You can then get a meaningful > backtrace from your debugger if you break on the gdk_x_error() > function.) > ./coot: line 310: 20503 Trace/breakpoint trap (core dumped) $coot_bin > "$@" > guile: error while loading shared libraries: libguile.so.17: cannot open > shared object file: No such file or directory > failed to launch the crash catcher > > version coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python > > coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python/bin/coot > INFO:: Reading coordinate file: > /apps/packages/coot-installer/coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python/share/coot/standard-residues.pdb > PDB file > /apps/packages/coot-installer/coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python/share/coot/standard-residues.pdb > has been read. > Spacegroup: P 1 > > (coot-bin:22592): Gdk-ERROR **: 22:30:09.321: The program 'coot-bin' > received an X Window System error. > This probably reflects a bug in the program. > The error was 'BadValue (integer parameter out of range for operation)'. > (Details: serial 321 error_code 2 request_code 149 minor_code 3) > (Note to programmers: normally, X errors are reported asynchronously; > that is, you will receive the error a while after causing it. > To debug your program, run it with the --sync command line > option to change this behavior. You can then get a meaningful > backtrace from your debugger if you break on the gdk_x_error() > function.) > /apps/packages/coot-installer/coot-Linux-x86_64-scientific-linux-7.6-pre-release-gtk2-python/bin/coot: > line 310: 22592 Trace/breakpoint trap (core dumped) $coot_bin "$@" > guile: error while loading shared libraries: libguile.so.17: cannot open > shared object file: No such file or directory > failed to launch the crash catcher > > Best regards, > > -Darin > > Darin Lory > > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
