Hi Paul, thanks for the quick response. I have used the map density histogram and you are right looks like the map is full of zeros, but I honestly don't get why I could use the map in phenix...
Igor On Wed, 12 Feb 2020 12:18:17 +0000, Paul Emsley <[email protected]> wrote: >On 12/02/2020 11:46, igor tascon wrote: >> >> I am having some problems to open a mrc cryoEM map in coot. I received the >> map as a spi volume file and I >> converted it into a mrc file using xmipp_image_convert command in scipion to >> perform some >> real_space_refienement, that worked fine. However, when I open in coot the >> mrc file the map is loaded (I can >> see it in the display manager) but I can not visualise it. Besides, if I try >> to change the map counter level >> I don't see any number: >> map 0 level: nanV ( nanrmsd) >> > >It seems as if you have a map full of zeros, sadly. To diagnose, you can use >the map density histogram in >Coot: Calculate -> Map Tools -> Map Density Histogram > >Also, you can try mapdump > >$ mapdump MAPIN converted.mrc >END > >Paul. > >######################################################################## > >To unsubscribe from the COOT list, click the following link: >https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1 ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=COOT&A=1
