I installed 0.9.5 on RHEL7.9 and it does not work. Just crashes. Enclosed is
the txt file of the output.
kas
Kenneth A. Satyshur, M.S., Ph.D.
Senior Scientist,
College of Ag and Life Sciences: Department of Bacteriology;
School of Medicine and Public Health:
Departments of Biomolecular Chemistry,
Neuroscience, Oncology, and Carbone Cancer Center
(Small Molecule Screening Facility)
University of Wisconsin-Madison
Madison, Wisconsin, 53706
608-215-5207
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CLIBD_MON not set using COOT_REFMAC_LIB_DIR
(coot-bin:8598): GLib-GObject-WARNING **: 16:39:59.063:
g_object_set_is_valid_property: object class 'GtkSettings' has no property
named 'gtk-application-prefer-dark-theme'
There are 143 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/list/mon_lib_list.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/a/ALA.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/a/ASP.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/a/ASN.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/c/CYS.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/g/GLN.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/g/GLY.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/g/GLU.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/p/PHE.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/h/HIS.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/i/ILE.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/l/LYS.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/l/LEU.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/m/MET.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/m/MSE.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/p/PRO.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/a/ARG.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/s/SER.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/t/THR.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/v/VAL.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/t/TRP.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/t/TYR.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/p/PO4.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/s/SO4.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/g/GOL.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/c/CIT.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/e/EDO.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/a/A.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/c/C.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/g/G.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/u/U.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/d/DA.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/d/DC.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/d/DG.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/d/DT.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/h/HOH.cif
There are 2 data in
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/share/coot/lib/data/monomers/n/NA.cif
Spacegroup: P 1
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
INFO:: coot.py imported
INFO:: coot_python initialized
Running python script
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/lib/python2.7/site-packages/coot/coot_load_modules.py
Good Afternoon Ken, Welcome to Coot version 0.9.5
(set-display-intro-string "Good Afternoon Ken, Welcome to Coot version 0.9.5")
Coot Python Scripting GUI code found and loaded.
Coot Python Scripting GUI code found and loaded.
(use-graphics-interface-state)
Running python script /home/satyshur/.coot-preferences/coot_toolbuttons.py
Running python script /home/satyshur/.coot-preferences/xenops_symmetry.py
(set-show-symmetry-master 1)
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
Coot Scheme Scripting GUI code found and loaded.
Good afternoon Ken Satyshur. Welcome to Coot 0.9.5.
(set-display-intro-string "Good afternoon Ken. Welcome to Coot 0.9.5")
(set-display-lists-for-maps 1)
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/bin/coot:
line 264: 8598 Illegal instruction (core dumped) $coot_bin "$@"
. ------ Coot crashed - trying to diagnose -----
ldd -r on guile gives:
linux-vdso.so.1 => (0x00007ffd0c7c0000)
libguile.so.17 =>
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/lib/libguile.so.17
(0x00007faad1ab5000)
libgmp.so.10 =>
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/lib/libgmp.so.10
(0x00007faad1840000)
libcrypt.so.1 => /lib64/libcrypt.so.1 (0x00007faad1609000)
libm.so.6 => /lib64/libm.so.6 (0x00007faad1307000)
libltdl.so.3 =>
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/lib/libltdl.so.3
(0x00007faad10ff000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007faad0efb000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007faad0cdf000)
libc.so.6 => /lib64/libc.so.6 (0x00007faad0911000)
/lib64/ld-linux-x86-64.so.2 (0x00007faad1daa000)
libfreebl3.so => /lib64/libfreebl3.so (0x00007faad070e000)
Guile 1.8.8
Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007,
2008 Free Software Foundation
Guile may be distributed under the terms of the GNU General Public Licence;
certain other uses are permitted as well. For details, see the file
`COPYING', which is included in the Guile distribution.
There is no warranty, to the extent permitted by law.
catching the crash log:
coot-exe:
"/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/libexec/coot-bin"
/usr/bin/ls
coot-version:
/home/xray/coot/coot-Linux-x86_64-scientific-linux-7.6-gtk2-python/libexec/coot-bin
platform:
/usr/bin/uname
core: #f
No core file found. No debugging
Linux dingo 3.10.0-1160.24.1.el7.x86_64 #1 SMP Thu Mar 25 21:21:56 UTC 2021
x86_64 x86_64 x86_64 GNU/Linux
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