Hi Paul, My apologies, was bit in a rush with new data to analyze.
For more informations : Mac OS Big Sur 11.5.2, XQuartz 2.8.1 (xorg-server 1.20.11), Coot 0.9.6 (updated via CCP4 (7.1.016). Here is the terminal output (if I downgrade back to coot 0.9.6, uninstalling the last ccp4 update, then coot does not crash) Hope it will help Xavier INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON: /Applications/ccp4-7.1/lib/data/monomers/ There are 244 data in /Applications/ccp4-7.1/lib/data/monomers/list/mon_lib_list.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ALA.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ASP.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ASN.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/CYS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLN.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLY.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GLU.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PHE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/h/HIS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/i/ILE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/l/LYS.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/l/LEU.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/m/MET.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/m/MSE.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PRO.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/ARG.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/s/SER.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/THR.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/v/VAL.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/TRP.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/t/TYR.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/p/PO4.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/s/SO4.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/GOL.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/CIT.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/e/EDO.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/a/A.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/c/C.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/g/G.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/u/U.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DA.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DC.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DG.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/d/DT.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/h/HOH.cif There are 2 data in /Applications/ccp4-7.1/lib/data/monomers/n/NA.cif Spacegroup: P 1 (filter-fileselection-filenames-state) (get-active-map-drag-flag) (use-graphics-interface-state) INFO:: coot.py imported ** (coot-bin:22238): WARNING **: Trying to register gtype 'GMountMountFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:22238): WARNING **: Trying to register gtype 'GDriveStartFlags' as enum when in fact it is of type 'GFlags' ** (coot-bin:22238): WARNING **: Trying to register gtype 'GSocketMsgFlags' as enum when in fact it is of type 'GFlags' INFO:: coot_python initialized Running python script /Applications/ccp4-7.1/lib/python2.7/site-packages/coot/coot_load_modules.py Good Morning Xavier, Welcome to Coot version 0.9.6 (set-display-intro-string "Good Morning Xavier, Welcome to Coot version 0.9.6") Coot Python Scripting GUI code found and loaded. Coot Python Scripting GUI code found and loaded. (use-graphics-interface-state) Running python script /Users/xbrazzolotto/.coot-preferences/coot_preferences.py (set-filter-fileselection-filenames 1) (set-sticky-sort-by-date) (set-colour-map-rotation-on-read-pdb 21.00) (set-colour-map-rotation-on-read-pdb-c-only-flag 1) (set-density-size 17.00) (set-swap-difference-map-colours 0) (set-colour-map-rotation-for-map 14.00) (set-active-map-drag-flag 1) (set-idle-function-rotate-angle 1.00) Running python script /Users/xbrazzolotto/.coot-preferences/xenops_symmetry.py (set-show-symmetry-master 1) (filter-fileselection-filenames-state) (get-active-map-drag-flag) Loading ~/.coot.py... Running python script /Users/xbrazzolotto/.coot.py (use-graphics-interface-state) Coot Scheme Scripting GUI code found and loaded. Good morning Xavier Brazzolotto. Welcome to Coot 0.9.6. (set-display-intro-string "Good morning Xavier. Welcome to Coot 0.9.6") (set-display-lists-for-maps 0) load /Users/xbrazzolotto/.coot-preferences/coot-preferences.scm (set-filter-fileselection-filenames 1) (set-sticky-sort-by-date) (set-colour-map-rotation-on-read-pdb 21.00) (set-colour-map-rotation-on-read-pdb-c-only-flag 1) (set-density-size 17.00) (set-swap-difference-map-colours 0) (set-colour-map-rotation-for-map 14.00) (set-active-map-drag-flag 1) Backtrace: In /Users/xbrazzolotto/.coot-preferences/coot-preferences.scm: 68: 0* (no-coot-tips) /Users/xbrazzolotto/.coot-preferences/coot-preferences.scm:68:1: In expression (no-coot-tips): /Users/xbrazzolotto/.coot-preferences/coot-preferences.scm:68:1: Unbound variable: no-coot-tips . ------ Coot crashed - trying to diagnose ----- Guile 1.8.8 Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation Guile may be distributed under the terms of the GNU General Public Licence; certain other uses are permitted as well. For details, see the file `COPYING', which is included in the Guile distribution. There is no warranty, to the extent permitted by law. catching the crash log: coot-exe: "/Applications/ccp4-7.1/libexec/coot-bin" /bin/ls -rwxr-xr-x 1 root admin 9877812 Sep 18 06:37 /Applications/ccp4-7.1/libexec/coot-bin coot-version: /Applications/ccp4-7.1/libexec/coot-bin Builder_info: CCP4, Oxfordshire, UK Enabled: Enhanced-ligand-tools C++-11 Threads Boost-based-thread-pool Goocanvas GSL LibCurl Binary type: Darwin-MacOSX-10.9.5-x86_64-python-gtk2 git commit: 0b823e493e00c1199103369ddab6641e14560d00 Builder_info: CCP4, Oxfordshire, UK [with python 2.7.16 embedded] [with guile 1.8.8 embedded] 0.9.6 (revision-count 10625) platform: /usr/bin/uname Darwin macbook-pro-de-xavier-brazzolotto-9.local 20.6.0 Darwin Kernel Version 20.6.0: Wed Jun 23 00:26:31 PDT 2021; root:xnu-7195.141.2~5/RELEASE_X86_64 x86_64 core: #f No core file found. No debugging > Le 18 sept. 2021 à 03:22, Paul Emsley <pems...@mrc-lmb.cam.ac.uk> a écrit : > > On 17/09/2021 09:17, Xavier Brazzolotto wrote: >> I am using Coot on a Mac (Big Sur) >> I’ve lately updated my CCP4 (7.1.016) which includes the latest Coot >> version, but after this update Coot systematically crashes (From Phenix or >> directly from my terminal). >> I’ve downgraded to CCP4 7.1.015, to get my Coot to work again. >> Any of you experiment such crashes ? >> How to solve this ? > > If this is not a bug report, then I have nothing to say (Coot does not > systematically crash for me). > > If it *is* a bug report, then I do... > > How do you know that it crashed? > > It would be helpful to see the crash catcher log. > > It would be less helpful, but it would at least be something, to see the > terminal output. > > But with no log at all and no recipe to reproduce, you have given us > litterally nothing to go on. That's not helful. > > Paul > > ######################################################################## > > To unsubscribe from the COOT list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > > This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list > hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ Xavier Brazzolotto, PhD Département de Toxicologie et Risques Chimiques Institut de Recherche Biomédicale des Armées BP 73 91223 Brétigny sur Orge France Phone +33 (0) 1 78 65 14 00 Alt Phone +33 (0) 4 57 42 87 19 Cell +33 (0) 6 58 36 39 09 The information in this e-mail may be privileged and confidential, intended only for the use of the addressee(s) above. Any unauthorized use or disclosure of this information is prohibited. If you have received this e-mail by mistake, please delete it and immediately contact the sender. ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
