Hi Paul, I have a dsDNA strand that the authors decided to give the chains A and B pseudo names C and D. The problem is they wrote the D chain i5' to 3 prime and I need it renumbered 3' to 5' so I can merge the pdb with another pdb that has a protein bound that distorts the chain a bit. I would just add on bp's but the psuedo numbering is mucking everything up,and adding bps does so in a perfect B form, hence my issue. I have never seen anything like this numbering system in this pdb and would like to get rid of it and then I might have an easier time reversing the order and merging two pdbs. Perhaps you will instantaneously know how to rid of this pseudo numbering?
I am running ubunto linux on Coot 0.9.8.6 EL I looked in the manual and searched the coot emails for a way to reverse the numbering, but only find ways to add or subtract numbers. Since the other pdb has the sequence numbering like a normal dsDNA strand looks (one strand A1-28 5-3' and the other strand B1-28 3-5') it is a total mismatch when I want to merge the files and have it all make sense to someone reading a file. the pdb is 1d3u any ideas would be worth their weight in gold :-) Best Regards, Paul Kraft ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
