Dear Paul,
I just had the chance to try out the new Coot version 9.8.91 from CCP4
and I would like to report that RSR of ribosomes is still broken (albeit
not as severely as before).
You can have a look at PDB-7K00 for examples:
https://www.rcsb.org/structure/7K00
https://www.ebi.ac.uk/emdb/EMD-22586
I went through the model with sphere refine to check for broken areas
and identified many, here are a few:
G533 in chain a
C823 in chain A
G1186 in chain A
C1147 in chain A
A614 in chain a
In addition, there are three modified residues in that model that still
require edited restraints to make them work in Coot:
D2T
3TD
6MZ
Here, the group name is "NON-POLYMER", I changed that to RNA (3TD+6MZ)
or L-peptide (D2T) which makes it work in Coot. Is that ok to do?
Many regards,
Helge
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