Ah yes, sorry forgot that crucial information. It is Coot 0.9.8.92 Marina Bay. Installed as part of CCP4 8.0. Currently on updated 16.
Best Christian On Wed, Nov 22, 2023 at 11:14 AM Keitaro Yamashita < [email protected]> wrote: > Dear Christian, > > What is the version of Coot, and how did you install it? > > Best regards, > Keitaro > > On Wed, 22 Nov 2023 at 19:02, Christian Roth <[email protected]> > wrote: > > > > Hi, > > I have a sugar ligand with a Sia linked alpha 23 to Gal. Refinement with > Refmac of phenix works and the link is recognized from the monomer > dictionary. After opening in Coot all intersugarbonds/links are shown > properly. Realspace refinement works for the other bonds, but the Sia Gal > bond gets broken and the SIA is pushed away. The distance increases to > about 3Ang. Looks like they are treated as not connected and this is the > antibump distance? > > Taken into account that this is a standard link from the monomer library > I would have suspected Coot recognizes that link automatically. What is the > source for that behaviour and do I need to supply an additional dictionary > for this link? > > > > Thanks and Best > > Christian > > > > ________________________________ > > > > To unsubscribe from the COOT list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 > ######################################################################## To unsubscribe from the COOT list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=COOT&A=1 This message was issued to members of www.jiscmail.ac.uk/COOT, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
