Hey Koji,
Possibly won't work here (but possibly will!). When overcommit_memory
is turned off, Java locks its VM memory into non-swap (this request is
additionally ignored when overcommit_memory is turned on...).
The problem occurs when spawning a bash process and not a JVM, so
there's a fighting chance that the process can be launched more in
swap, but you aren't exactly solving the problem...
Brian
On Nov 18, 2008, at 5:32 PM, Koji Noguchi wrote:
We had a similar issue before with Secondary Namenode failing with
2008-10-09 02:00:58,288 ERROR
org.apache.hadoop.dfs.NameNode.Secondary:
java.io.IOException:
javax.security.auth.login.LoginException: Login failed: Cannot run
program "whoami": java.io.IOException:
error=12, Cannot allocate memory
In our case, simply increasing the swap space fixed our problem.
http://hudson.gotdns.com/wiki/display/HUDSON/IOException+Not+enough+spac
e
When checking with strace, it was failing at
[pid 7927] clone(child_stack=0,
flags=CLONE_CHILD_CLEARTID|CLONE_CHILD_SETTID|SIGCHLD,
child_tidptr=0x4133c9f0) = -1 ENOMEM (Cannot allocate memory)
Without CLONE_VM. In the clone man page,
"If CLONE_VM is not set, the child process runs in a separate copy
of
the memory space of the calling process
at the time of clone. Memory writes or file mappings/unmappings
performed by one of the processes do not affect the
other, as with fork(2). "
Koji
-----Original Message-----
From: Brian Bockelman [mailto:[EMAIL PROTECTED]
Sent: Tuesday, November 18, 2008 3:12 PM
To: core-user@hadoop.apache.org
Subject: Re: Cannot run program "bash": java.io.IOException: error=12,
Cannot allocate memory
Hey Xavier,
Don't forget, the Linux kernel reserves the memory; current heap space
is disregarded. How much heap space does your data node and
tasktracker get? (PS: overcommit ratio is disregarded if
overcommit_memory=2).
You also have to remember that there is some overhead from the OS, the
Java code cache, and a bit from running the JVM. Add at least 64 MB
per JVM for code cache and running, and we get 400MB of memory left
for the OS and any other process running.
You're definitely running out of memory. Either allow overcommitting
(which will mean Java is no longer locked out of swap) or reduce
memory consumption.
Brian
On Nov 18, 2008, at 4:57 PM, Xavier Stevens wrote:
1) It doesn't look like I'm out of memory but it is coming really
close.
2) overcommit_memory is set to 2, overcommit_ratio = 100
As for the JVM, I am using Java 1.6.
**Note of Interest**: The virtual memory I see allocated in top for
each
task is more than what I am specifying in the hadoop job/site
configs.
Currently each physical box has 16 GB of memory. I see the datanode
and
tasktracker using:
RES VIRT
Datanode 145m 1408m
Tasktracker 206m 1439m
When idle.
So taking that into account I do 16000 MB - (1408+1439) MB which
would
leave me with 13200 MB. In my old settings I was using 8 map tasks
so
13200 / 8 = 1650 MB.
My mapred.child.java.opts is -Xmx1536m which should leave me a little
head room.
When running though I see some tasks reporting 1900m.
-Xavier
-----Original Message-----
From: Brian Bockelman [mailto:[EMAIL PROTECTED]
Sent: Tuesday, November 18, 2008 2:42 PM
To: core-user@hadoop.apache.org
Subject: Re: Cannot run program "bash": java.io.IOException:
error=12,
Cannot allocate memory
Hey Xavier,
1) Are you out of memory (dumb question, but doesn't hurt to ask...)?
What does Ganglia tell you about the node?
2) Do you have /proc/sys/vm/overcommit_memory set to 2?
Telling Linux not to overcommit memory on Java 1.5 JVMs can be very
problematic. Java 1.5 asks for min heap size + 1 GB of reserved,
non-
swap memory on Linux systems by default. The 1GB of reserved, non-
swap
memory is used for the JIT to compile code; this bug wasn't fixed
until
later Java 1.5 updates.
Brian
On Nov 18, 2008, at 4:32 PM, Xavier Stevens wrote:
I'm still seeing this problem on a cluster using Hadoop 0.18.2. I
tried
dropping the max number of map tasks per node from 8 to 7. I still
get
the error although it's less frequent. But I don't get the error at
all
when using Hadoop 0.17.2.
Anyone have any suggestions?
-Xavier
-----Original Message-----
From: [EMAIL PROTECTED] On Behalf Of Edward J. Yoon
Sent: Thursday, October 09, 2008 2:07 AM
To: core-user@hadoop.apache.org
Subject: Re: Cannot run program "bash": java.io.IOException:
error=12,
Cannot allocate memory
Thanks Alexander!!
On Thu, Oct 9, 2008 at 4:49 PM, Alexander Aristov
<[EMAIL PROTECTED]> wrote:
I received such errors when I overloaded data nodes. You may
increase
swap space or run less tasks.
Alexander
2008/10/9 Edward J. Yoon <[EMAIL PROTECTED]>
Hi,
I received below message. Can anyone explain this?
08/10/09 11:53:33 INFO mapred.JobClient: Task Id :
task_200810081842_0004_m_000000_0, Status : FAILED
java.io.IOException: Cannot run program "bash":
java.io.IOException:
error=12, Cannot allocate memory
at java.lang.ProcessBuilder.start(ProcessBuilder.java:459)
at org.apache.hadoop.util.Shell.runCommand(Shell.java:149)
at org.apache.hadoop.util.Shell.run(Shell.java:134)
at org.apache.hadoop.fs.DF.getAvailable(DF.java:73)
at
org.apache.hadoop.fs.LocalDirAllocator
$AllocatorPerContext.getLocalPathF
orWrite(LocalDirAllocator.java:296)
at
org
.apache
.hadoop.fs.LocalDirAllocator.getLocalPathForWrite(LocalDirAllo
cator.java:124)
at
org
.apache
.hadoop.mapred.MapOutputFile.getSpillFileForWrite(MapOutputFil
e.java:107)
at
org.apache.hadoop.mapred.MapTask
$MapOutputBuffer.sortAndSpill(MapTask.ja
va:734)
at
org.apache.hadoop.mapred.MapTask$MapOutputBuffer.flush(MapTask.java:
694)
at org.apache.hadoop.mapred.MapTask.run(MapTask.java:220)
at
org.apache.hadoop.mapred.TaskTracker$Child.main(TaskTracker.java:
2124
) Caused by: java.io.IOException: java.io.IOException: error=12,
Cannot allocate memory
at java.lang.UNIXProcess.<init>(UNIXProcess.java:148)
at java.lang.ProcessImpl.start(ProcessImpl.java:65)
at java.lang.ProcessBuilder.start(ProcessBuilder.java:452)
... 10 more
--
Best regards, Edward J. Yoon
[EMAIL PROTECTED]
http://blog.udanax.org
--
Best Regards
Alexander Aristov
--
Best regards, Edward J. Yoon
[EMAIL PROTECTED]
http://blog.udanax.org
