This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear Erick Antezana, This is a computer-generated test report for onto-perl-0.32, created automatically by CPAN::Reporter, version 0.43, and sent to the CPAN Testers mailing list. If you have received this email directly, it is because the person testing your distribution chose to send a copy to your CPAN email address; there may be a delay before the official report is received and processed by CPAN Testers. Thank you for uploading your work to CPAN. However, it appears that your distribution tests are not fully supported on this machine, either due to operating system limitations or missing prerequisite modules. If the failure is due to missing prerequisites, you may wish to disregard this report. Sections of this report: * Tester comments * Prerequisites * Environment and other context * Test output ------------------------------ TESTER COMMENTS ------------------------------ Additional comments from tester: [none provided] ------------------------------ PREREQUISITES ------------------------------ Prerequisite modules loaded: requires: Module Need Have ------------ ---- ---- ! SWISS::Entry 1.65 n/a XML::Simple 2.16 2.16 ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: LANG = C PATH = /usr/lib/ccache:/home/sand/bin:/usr/local/bin:/usr/local/perl/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/X11/bin:/sbin:/usr/sbin PERL5LIB = /home/sand/.cpan/build/Log-Handler-0.36-eUoTP8/blib/arch:/home/sand/.cpan/build/Log-Handler-0.36-eUoTP8/blib/lib:/home/sand/.cpan/build/Devel-Backtrace-0.05-I84HeP/blib/arch:/home/sand/.cpan/build/Devel-Backtrace-0.05-I84HeP/blib/lib:/home/sand/.cpan/build/String-Escape-2002.001-J1JHcQ/blib/arch:/home/sand/.cpan/build/String-Escape-2002.001-J1JHcQ/blib/lib:/home/sand/.cpan/build/Geo-Query-LatLong-0.8002-zMhxLh/blib/arch:/home/sand/.cpan/build/Geo-Query-LatLong-0.8002-zMhxLh/blib/lib:/home/sand/.cpan/build/Geo-Query-0.01-MCXBuS/blib/arch:/home/sand/.cpan/build/Geo-Query-0.01-MCXBuS/blib/lib:/home/sand/.cpan/build/Gas-Prices-0.0.4-tjEl8Z/blib/arch:/home/sand/.cpan/build/Gas-Prices-0.0.4-tjEl8Z/blib/lib:/home/sand/.cpan/build/HTTP-Lite-2.1.6-6xx6UM/blib/arch:/home/sand/.cpan/build/HTTP-Lite-2.1.6-6xx6UM/blib/lib:/home/sand/.cpan/build/Eludia-07.06.15-LPw3HM/blib/arch:/home/sand/.cpan/build/Eludia-07.06.15-LPw3HM/blib/lib:/home/sand/.cpan/build/WWW-Mechanize-CGI-0! .3-urURhc/blib/arch:/home/sand/.cpan/build/WWW-Mechanize-CGI-0.3-urURhc/blib/lib:/home/sand/.cpan/build/Getopt-Easy-0.1-yBRauW/blib/arch:/home/sand/.cpan/build/Getopt-Easy-0.1-yBRauW/blib/lib:/home/sand/.cpan/build/ModPerl-VersionUtil-0.03-0V2Q48/blib/arch:/home/sand/.cpan/build/ModPerl-VersionUtil-0.03-0V2Q48/blib/lib:/home/sand/.cpan/build/Devel-PDB-0.05-1V2PaB/blib/arch:/home/sand/.cpan/build/Devel-PDB-0.05-1V2PaB/blib/lib:/home/sand/.cpan/build/Curses-UI-0.95-aoUiOf/blib/arch:/home/sand/.cpan/build/Curses-UI-0.95-aoUiOf/blib/lib:/home/sand/.cpan/build/DBIx-FileSystem-1.2-Ucw8T2/blib/arch:/home/sand/.cpan/build/DBIx-FileSystem-1.2-Ucw8T2/blib/lib:/home/sand/.cpan/build/Date-Holidays-NZ-1.01-xkPIIk/blib/arch:/home/sand/.cpan/build/Date-Holidays-NZ-1.01-xkPIIk/blib/lib:/home/sand/.cpan/build/Catalyst-Model-CacheFunky-Loader-0.04-CRct4j/blib/arch:/home/sand/.cpan/build/Catalyst-Model-CacheFunky-Loader-0.04-CRct4j/blib/lib:/home/sand/.cpan/build/Cache-Funky-0.0.5-NXNfjB/blib! /arch:/home/sand/.cpan/build/Cache-Funky-0.0.5-NXNfjB/blib/lib:/home/s and/.cpan/build/Module-Recursive-Require-0.04-lZ1eKS/blib/arch:/home/sand/.cpan/build/Module-Recursive-Require-0.04-lZ1eKS/blib/lib:/home/sand/.cpan/build/Calendar-Japanese-Holiday-0.02-SCbc4N/blib/arch:/home/sand/.cpan/build/Calendar-Japanese-Holiday-0.02-SCbc4N/blib/lib:/home/sand/.cpan/build/Bundle-Complete-Catalyst-0.01-s5efhh/blib/arch:/home/sand/.cpan/build/Bundle-Complete-Catalyst-0.01-s5efhh/blib/lib:/home/sand/.cpan/build/Bio-DOOP-DOOP-0.25-TlcVvN/blib/arch:/home/sand/.cpan/build/Bio-DOOP-DOOP-0.25-TlcVvN/blib/lib:/home/sand/.cpan/build/XML-DTD-0.06-P4WWEA/blib/arch:/home/sand/.cpan/build/XML-DTD-0.06-P4WWEA/blib/lib:/home/sand/.cpan/build/ControlX10-CM17-0.07-vhFPSx/blib/arch:/home/sand/.cpan/build/ControlX10-CM17-0.07-vhFPSx/blib/lib:/home/sand/.cpan/build/ControlX10-CM11-2.09-w4tpZT/blib/arch:/home/sand/.cpan/build/ControlX10-CM11-2.09-w4tpZT/blib/lib:/home/sand/.cpan/build/Regexp-Wildcards-0.02-6iaVSF/blib/arch:/home/sand/.cpan/build/Regexp-Wildcards-0.02-6iaVSF! /blib/lib:/home/sand/.cpan/build/Net-OICQ-1.6-ViwdYl/blib/arch:/home/sand/.cpan/build/Net-OICQ-1.6-ViwdYl/blib/lib:/home/sand/.cpan/build/Crypt-OICQ-1.1-M7UIpT/blib/arch:/home/sand/.cpan/build/Crypt-OICQ-1.1-M7UIpT/blib/lib:/home/sand/.cpan/build/Net-Daemon-g7leqC/blib/arch:/home/sand/.cpan/build/Net-Daemon-g7leqC/blib/lib:/home/sand/.cpan/build/FCGI-Spawn-0.1-b3hZxD/blib/arch:/home/sand/.cpan/build/FCGI-Spawn-0.1-b3hZxD/blib/lib PERL5_CPANPLUS_IS_RUNNING = 1 PERL5_CPAN_IS_RUNNING = 1 SHELL = /bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/bin/perl UID: $< = 1005 EUID: $> = 1005 GID: $( = 1005 1005 EGID: $) = 1005 1005 Perl module toolchain versions installed: Module Have ------------------- ------- CPAN 1.9102 Cwd 3.25 ExtUtils::CBuilder 0.19 ExtUtils::Command 1.13 ExtUtils::Install 1.41_01 ExtUtils::MakeMaker 6.32_01 ExtUtils::Manifest 1.51_01 ExtUtils::ParseXS 2.18 File::Spec 3.25 Module::Build 0.2808 Module::Signature 0.55 Test::Harness 2.64 Test::More 0.70 version 0.7203 ------------------------------ TEST OUTPUT ------------------------------ Output from '/usr/bin/make test': PERL_DL_NONLAZY=1 /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/CCO_ID...............ok t/CCO_ID_Set...........ok t/CCO_ID_Term_Map......ok t/Dbxref...............ok t/DbxrefSet............ok t/Def..................ok t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............ok t/IntActParser.........ok t/NCBIParser...........ok t/OBOParser............ok t/Ontology.............Can't use string ("2") as an ARRAY ref while "strict refs" in use at t/Ontology.t line 250. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 73-166 Failed 94/166 tests, 43.37% okay t/OWLParser............ok t/Relationship.........ok t/RelationshipType.....ok t/Set..................ok t/Synonym..............ok t/SynonymSet...........Can't use string ("0") as an ARRAY ref while "strict refs" in use at t/SynonymSet.t line 27. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 3-33 Failed 31/33 tests, 6.06% okay t/SynonymTypeDef.......ok t/SynonymTypeDefSet....Can't use string ("0") as an ARRAY ref while "strict refs" in use at t/SynonymTypeDefSet.t line 27. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 3-30 Failed 28/30 tests, 6.67% okay t/Term.................ok t/TermSet..............Can't use string ("0") as an ARRAY ref while "strict refs" in use at t/TermSet.t line 27. dubious Test returned status 255 (wstat 65280, 0xff00) DIED. FAILED tests 3-33 Failed 31/33 tests, 6.06% okay t/UniProtParser........Can't locate SWISS/Entry.pm in @INC (@INC contains: /home/sand/.cpan/build/onto-perl-0.32-VMvHpZ/blib/lib /home/sand/.cpan/build/onto-perl-0.32-VMvHpZ/blib/arch /home/sand/.cpan/build/Log-Handler-0.36-eUoTP8/blib/arch /home/sand/.cpan/build/Log-Handler-0.36-eUoTP8/blib/lib /home/sand/.cpan/build/Devel-Backtrace-0.05-I84HeP/blib/arch /home/sand/.cpan/build/Devel-Backtrace-0.05-I84HeP/blib/lib /home/sand/.cpan/build/String-Escape-2002.001-J1JHcQ/blib/arch /home/sand/.cpan/build/String-Escape-2002.001-J1JHcQ/blib/lib /home/sand/.cpan/build/Geo-Query-LatLong-0.8002-zMhxLh/blib/arch /home/sand/.cpan/build/Geo-Query-LatLong-0.8002-zMhxLh/blib/lib /home/sand/.cpan/build/Geo-Query-0.01-MCXBuS/blib/arch /home/sand/.cpan/build/Geo-Query-0.01-MCXBuS/blib/lib /home/sand/.cpan/build/Gas-Prices-0.0.4-tjEl8Z/blib/arch /home/sand/.cpan/build/Gas-Prices-0.0.4-tjEl8Z/blib/lib /home/sand/.cpan/build/HTTP-Lite-2.1.6-6xx6UM/blib/arch /home/sand/.cpan/build/HTTP-Lite-2.1.6-! 6xx6UM/blib/lib /home/sand/.cpan/build/Eludia-07.06.15-LPw3HM/blib/arch /home/sand/.cpan/build/Eludia-07.06.15-LPw3HM/blib/lib /home/sand/.cpan/build/WWW-Mechanize-CGI-0.3-urURhc/blib/arch /home/sand/.cpan/build/WWW-Mechanize-CGI-0.3-urURhc/blib/lib /home/sand/.cpan/build/Getopt-Easy-0.1-yBRauW/blib/arch /home/sand/.cpan/build/Getopt-Easy-0.1-yBRauW/blib/lib /home/sand/.cpan/build/ModPerl-VersionUtil-0.03-0V2Q48/blib/arch /home/sand/.cpan/build/ModPerl-VersionUtil-0.03-0V2Q48/blib/lib /home/sand/.cpan/build/Devel-PDB-0.05-1V2PaB/blib/arch /home/sand/.cpan/build/Devel-PDB-0.05-1V2PaB/blib/lib /home/sand/.cpan/build/Curses-UI-0.95-aoUiOf/blib/arch /home/sand/.cpan/build/Curses-UI-0.95-aoUiOf/blib/lib /home/sand/.cpan/build/DBIx-FileSystem-1.2-Ucw8T2/blib/arch /home/sand/.cpan/build/DBIx-FileSystem-1.2-Ucw8T2/blib/lib /home/sand/.cpan/build/Date-Holidays-NZ-1.01-xkPIIk/blib/arch /home/sand/.cpan/build/Date-Holidays-NZ-1.01-xkPIIk/blib/lib /home/sand/.cpan/build/Catalyst-Model-! CacheFunky-Loader-0.04-CRct4j/blib/arch /home/sand/.cpan/build/Catalys t-Model-CacheFunky-Loader-0.04-CRct4j/blib/lib /home/sand/.cpan/build/Cache-Funky-0.0.5-NXNfjB/blib/arch /home/sand/.cpan/build/Cache-Funky-0.0.5-NXNfjB/blib/lib /home/sand/.cpan/build/Module-Recursive-Require-0.04-lZ1eKS/blib/arch /home/sand/.cpan/build/Module-Recursive-Require-0.04-lZ1eKS/blib/lib /home/sand/.cpan/build/Calendar-Japanese-Holiday-0.02-SCbc4N/blib/arch /home/sand/.cpan/build/Calendar-Japanese-Holiday-0.02-SCbc4N/blib/lib /home/sand/.cpan/build/Bundle-Complete-Catalyst-0.01-s5efhh/blib/arch /home/sand/.cpan/build/Bundle-Complete-Catalyst-0.01-s5efhh/blib/lib /home/sand/.cpan/build/Bio-DOOP-DOOP-0.25-TlcVvN/blib/arch /home/sand/.cpan/build/Bio-DOOP-DOOP-0.25-TlcVvN/blib/lib /home/sand/.cpan/build/XML-DTD-0.06-P4WWEA/blib/arch /home/sand/.cpan/build/XML-DTD-0.06-P4WWEA/blib/lib /home/sand/.cpan/build/ControlX10-CM17-0.07-vhFPSx/blib/arch /home/sand/.cpan/build/ControlX10-CM17-0.07-vhFPSx/blib/lib /home/sand/.cpan/build/ControlX10-CM11-2.09-w4tpZT/blib/arch /hom! e/sand/.cpan/build/ControlX10-CM11-2.09-w4tpZT/blib/lib /home/sand/.cpan/build/Regexp-Wildcards-0.02-6iaVSF/blib/arch /home/sand/.cpan/build/Regexp-Wildcards-0.02-6iaVSF/blib/lib /home/sand/.cpan/build/Net-OICQ-1.6-ViwdYl/blib/arch /home/sand/.cpan/build/Net-OICQ-1.6-ViwdYl/blib/lib /home/sand/.cpan/build/Crypt-OICQ-1.1-M7UIpT/blib/arch /home/sand/.cpan/build/Crypt-OICQ-1.1-M7UIpT/blib/lib /home/sand/.cpan/build/Net-Daemon-g7leqC/blib/arch /home/sand/.cpan/build/Net-Daemon-g7leqC/blib/lib /home/sand/.cpan/build/FCGI-Spawn-0.1-b3hZxD/blib/arch /home/sand/.cpan/build/FCGI-Spawn-0.1-b3hZxD/blib/lib /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/5.9.5/i686-linux-64int /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/5.9.5/i686-linux-64int /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/5.9.5 /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/site_perl/5.9.5/i686-linux-64int ! /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED] /lib/site_perl/5.9.5/i686-linux-64int /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/site_perl/5.9.5 . /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/5.9.5/i686-linux-64int /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/5.9.5 /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/site_perl/5.9.5/i686-linux-64int /home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED]/lib/site_perl/5.9.5 .) at /home/sand/.cpan/build/onto-perl-0.32-VMvHpZ/blib/lib/CCO/Parser/UniProtParser.pm line 21. BEGIN failed--compilation aborted at /home/sand/.cpan/build/onto-perl-0.32-VMvHpZ/blib/lib/CCO/Parser/UniProtParser.pm line 21. Compilation failed in require at t/UniProtParser.t line 15. BEGIN failed--compilation aborted at t/UniProtParser.t line 15. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-7 Failed 7/7 tests, 0.00% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/Ontology.t 255 65280 166 188 73-166 t/SynonymSet.t 255 65280 33 62 3-33 t/SynonymTypeDefSet.t 255 65280 30 56 3-30 t/TermSet.t 255 65280 33 62 3-33 t/UniProtParser.t 2 512 7 14 1-7 Failed 5/24 test scripts. 191/597 subtests failed. Files=24, Tests=597, 56 wallclock secs (23.34 cusr + 0.75 csys = 24.09 CPU) Failed 5/24 test programs. 191/597 subtests failed. make: *** [test_dynamic] Error 2 -- Summary of my perl5 (revision 5 version 9 subversion 5) configuration: Platform: osname=linux, osvers=2.6.18-4-k7, archname=i686-linux-64int uname='linux k75 2.6.18-4-k7 #1 smp mon mar 26 17:57:15 utc 2007 i686 gnulinux ' config_args='-Dprefix=/home/src/perl/repoperls/installed-perls/perl/pJmMJbc/[EMAIL PROTECTED] -Dinstallusrbinperl=n -Uversiononly -Doptimize=-g -des -Duse64bitint -Dusedevel' hint=recommended, useposix=true, d_sigaction=define useithreads=undef, usemultiplicity=undef useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef use64bitint=define, use64bitall=undef, uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64', optimize='-g', cppflags='-DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include' ccversion='', gccversion='4.1.2 20061115 (prerelease) (Debian 4.1.1-21)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -L/usr/local/lib' libpth=/usr/local/lib /lib /usr/lib /usr/lib64 libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc libc=/lib/libc-2.3.6.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='2.3.6' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E' cccdlflags='-fPIC', lddlflags='-shared -g -L/usr/local/lib'
