This distribution has been tested as part of the cpan-testers effort to test as many new uploads to CPAN as possible. See http://testers.cpan.org/
Please cc any replies to [email protected] to keep other test volunteers informed and to prevent any duplicate effort. -- Dear EASR, This is a computer-generated error report created automatically by CPANPLUS, version 0.80. Testers personal comments may appear at the end of this report. Thank you for uploading your work to CPAN. However, it appears that there were some problems testing your distribution. TEST RESULTS: Below is the error stack from stage 'make test': [MSG] [Fri Nov 23 21:26:25 2007] Trying to get 'http://www.cpan.org/authors/id/E/EA/EASR/onto-perl/CHECKSUMS' [MSG] [Fri Nov 23 21:26:26 2007] Checksum matches for 'onto-perl-1.03.tar.gz' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/ulo_cco.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_g_dummy.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/test_orthomcl.dat' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/pre_cco.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/nodes_dummy.dmp' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_i_At.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/out_I_A_thaliana.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/goa_assoc.txt' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_b.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_g.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_o.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/goa_assoc_filt.txt' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_u.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/Ath_cc_up.map' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/arath_small-05.xml' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_b_sce.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/out_cco.obo.old' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/names_dummy.dmp' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/test_ulo_cco2.owl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/Ath_up.map' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/arath_small-07.xml' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/out_omcl.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_id_term.map' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/pre_cco_core.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_b_hsa.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_b_ath.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/up_test.txt' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/alpha.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_t.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/fake_ulo_cco.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/out_cco_up.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/out_cco.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/header.obo' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/data/cco_i.ids' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/SynonymSet.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/GoaAssociation.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/OBOParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Ontology.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/NCBIParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/OWLParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/TermSet.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/CCO_ID_Set.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/GoaAssociationSet.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Def.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/CCO_ID.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Synonym.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/RelationshipType.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/SynonymTypeDef.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/UniProtParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Set.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/IntActParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/NewIntActParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/OrthoMCLParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/CCO_ID_Term_Map.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/GoaParser.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Dbxref.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/SynonymTypeDefSet.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/IDspace.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/DbxrefSet.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Term.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Relationship.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/t/Ontolome.t' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/DbxrefSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/ObjectIdSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/Set.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/XMLIntactParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/CCO_ID_Set.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/CCO_ID_Term_Map.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/SynonymTypeDefSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/CCO_ID.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/Ontolome.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/SynonymSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/TermSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/GoaAssociationSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Util/ObjectSet.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/GoaAssociation.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Synonym.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Def.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Interaction.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Relationship.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/SynonymTypeDef.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Term.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Dbxref.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/IDspace.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/RelationshipType.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Ontology.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Core/Interactor.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/UniProtParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/NCBIParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/InteractionManager.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/OrthoMCLParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/IntActParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/OBOParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/OWLParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/GoaParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/CCO/Parser/NewIntActParser.pm' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/Changes' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/MANIFEST' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/term_id_vs_term_def.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/names.xsl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/get_descendent_terms.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/owl2obo.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/obo2cco.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/obsolete_term_id_vs_name_in_go.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/xml2html.xsl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/obsolete_term_id_vs_def_in_go.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/obo2xml.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/term_id_vs_term_name.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/obo2owl.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/go2owl.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/scripts/get_ancestor_terms.pl' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/LICENSE' [MSG] [Fri Nov 23 21:26:28 2007] Extracted 'onto-perl-1.03/README' [MSG] [Fri Nov 23 21:26:29 2007] Extracted 'onto-perl-1.03/META.yml' [MSG] [Fri Nov 23 21:26:29 2007] Extracted 'onto-perl-1.03/onto-perl.pod' [MSG] [Fri Nov 23 21:26:29 2007] Extracted 'onto-perl-1.03/INSTALL' [MSG] [Fri Nov 23 21:26:29 2007] Extracted 'onto-perl-1.03/Makefile.PL' [MSG] [Fri Nov 23 21:26:29 2007] Extracted 'onto::perl' to '/home/cpan/perl581/.cpanplus/5.8.1/build/onto-perl-1.03' [MSG] [Fri Nov 23 21:26:29 2007] XML::XPath is missing. This module is only required in order to perform parsing operations with IntAct-XML files. However, this module is not required for using onto-perl. If you do not intend to use IntAct XML files, then you may continue, and install XML::XPath in the future. SWISS::Entry is missing. This module is only required in order to perform parsing operations with UniProt files. However, this module is not required for using onto-perl. If you do not intend to use UniProt files, then you may continue, and install SWISS::Entry in the future. XML::Parser is missing. This module is only required in order to perform parsing operations with XML files (obo2owl). However, this module is not fully required for using onto-perl. If you do not intend to convert your files to OWL, then you may continue, and install XML::Parser in the future. Checking if your kit is complete... Looks good Writing Makefile for CCO [MSG] [Fri Nov 23 21:26:30 2007] DEFAULT 'filter_prereqs' HANDLER RETURNING 'sub return value' [MSG] [Fri Nov 23 21:26:39 2007] cp CCO/Core/IDspace.pm blib/lib/CCO/Core/IDspace.pm cp CCO/Core/Interaction.pm blib/lib/CCO/Core/Interaction.pm cp CCO/Core/Dbxref.pm blib/lib/CCO/Core/Dbxref.pm cp CCO/Core/Ontology.pm blib/lib/CCO/Core/Ontology.pm cp CCO/Parser/InteractionManager.pm blib/lib/CCO/Parser/InteractionManager.pm cp CCO/Util/TermSet.pm blib/lib/CCO/Util/TermSet.pm cp CCO/Core/Relationship.pm blib/lib/CCO/Core/Relationship.pm cp CCO/Core/SynonymTypeDef.pm blib/lib/CCO/Core/SynonymTypeDef.pm cp CCO/Parser/OWLParser.pm blib/lib/CCO/Parser/OWLParser.pm cp CCO/Parser/OrthoMCLParser.pm blib/lib/CCO/Parser/OrthoMCLParser.pm cp CCO/Parser/GoaParser.pm blib/lib/CCO/Parser/GoaParser.pm cp CCO/Core/GoaAssociation.pm blib/lib/CCO/Core/GoaAssociation.pm cp CCO/Util/ObjectSet.pm blib/lib/CCO/Util/ObjectSet.pm cp CCO/Util/Ontolome.pm blib/lib/CCO/Util/Ontolome.pm cp CCO/Util/DbxrefSet.pm blib/lib/CCO/Util/DbxrefSet.pm cp CCO/Util/CCO_ID_Term_Map.pm blib/lib/CCO/Util/CCO_ID_Term_Map.pm cp CCO/Util/SynonymSet.pm blib/lib/CCO/Util/SynonymSet.pm cp CCO/Util/CCO_ID_Set.pm blib/lib/CCO/Util/CCO_ID_Set.pm cp CCO/Util/XMLIntactParser.pm blib/lib/CCO/Util/XMLIntactParser.pm cp CCO/Parser/UniProtParser.pm blib/lib/CCO/Parser/UniProtParser.pm cp onto-perl.pod blib/lib/onto-perl.pod cp CCO/Core/Interactor.pm blib/lib/CCO/Core/Interactor.pm cp CCO/Core/Def.pm blib/lib/CCO/Core/Def.pm cp CCO/Util/SynonymTypeDefSet.pm blib/lib/CCO/Util/SynonymTypeDefSet.pm cp CCO/Core/Term.pm blib/lib/CCO/Core/Term.pm cp CCO/Parser/NCBIParser.pm blib/lib/CCO/Parser/NCBIParser.pm cp CCO/Core/Synonym.pm blib/lib/CCO/Core/Synonym.pm cp CCO/Parser/IntActParser.pm blib/lib/CCO/Parser/IntActParser.pm cp CCO/Util/GoaAssociationSet.pm blib/lib/CCO/Util/GoaAssociationSet.pm cp CCO/Util/CCO_ID.pm blib/lib/CCO/Util/CCO_ID.pm cp CCO/Util/Set.pm blib/lib/CCO/Util/Set.pm cp CCO/Parser/NewIntActParser.pm blib/lib/CCO/Parser/NewIntActParser.pm cp CCO/Parser/OBOParser.pm blib/lib/CCO/Parser/OBOParser.pm cp CCO/Util/ObjectIdSet.pm blib/lib/CCO/Util/ObjectIdSet.pm cp CCO/Core/RelationshipType.pm blib/lib/CCO/Core/RelationshipType.pm cp scripts/term_id_vs_term_def.pl blib/script/term_id_vs_term_def.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/term_id_vs_term_def.pl cp scripts/owl2obo.pl blib/script/owl2obo.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/owl2obo.pl cp scripts/obo2cco.pl blib/script/obo2cco.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2cco.pl cp scripts/obo2xml.pl blib/script/obo2xml.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2xml.pl cp scripts/get_ancestor_terms.pl blib/script/get_ancestor_terms.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/get_ancestor_terms.pl cp scripts/obsolete_term_id_vs_name_in_go.pl blib/script/obsolete_term_id_vs_name_in_go.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obsolete_term_id_vs_name_in_go.pl cp scripts/term_id_vs_term_name.pl blib/script/term_id_vs_term_name.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/term_id_vs_term_name.pl cp scripts/go2owl.pl blib/script/go2owl.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/go2owl.pl cp scripts/obo2owl.pl blib/script/obo2owl.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obo2owl.pl cp scripts/obsolete_term_id_vs_def_in_go.pl blib/script/obsolete_term_id_vs_def_in_go.pl /home/cpan/perl581/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/obsolete_term_id_vs_def_in_go.pl Manifying blib/man1/obsolete_term_id_vs_name_in_go.pl.1 Manifying blib/man1/get_ancestor_terms.pl.1 Manifying blib/man1/owl2obo.pl.1 Manifying blib/man1/go2owl.pl.1 Manifying blib/man1/obo2owl.pl.1 Manifying blib/man1/obsolete_term_id_vs_def_in_go.pl.1 Manifying blib/man3/CCO::Parser::NCBIParser.3 Manifying blib/man3/CCO::Parser::GoaParser.3 Manifying blib/man3/CCO::Util::DbxrefSet.3 Manifying blib/man3/CCO::Core::Term.3 Manifying blib/man3/CCO::Core::Synonym.3 Manifying blib/man3/CCO::Core::Dbxref.3 Manifying blib/man3/CCO::Core::Interactor.3 Manifying blib/man3/CCO::Core::RelationshipType.3 Manifying blib/man3/CCO::Util::CCO_ID.3 Manifying blib/man3/CCO::Parser::UniProtParser.3 Manifying blib/man3/CCO::Util::SynonymSet.3 Manifying blib/man3/CCO::Util::ObjectSet.3 Manifying blib/man3/CCO::Parser::InteractionManager.3 Manifying blib/man3/CCO::Parser::NewIntActParser.3 Manifying blib/man3/CCO::Util::Set.3 Manifying blib/man3/CCO::Util::CCO_ID_Set.3 Manifying blib/man3/CCO::Util::ObjectIdSet.3 Manifying blib/man3/CCO::Util::GoaAssociationSet.3 Manifying blib/man3/CCO::Util::CCO_ID_Term_Map.3 Manifying blib/man3/CCO::Core::GoaAssociation.3 Manifying blib/man3/CCO::Core::Ontology.3 Manifying blib/man3/CCO::Parser::OrthoMCLParser.3 Manifying blib/man3/CCO::Core::Relationship.3 Manifying blib/man3/CCO::Parser::OWLParser.3 Manifying blib/man3/CCO::Core::Interaction.3 Manifying blib/man3/CCO::Parser::IntActParser.3 Manifying blib/man3/CCO::Parser::OBOParser.3 Manifying blib/man3/CCO::Core::SynonymTypeDef.3 Manifying blib/man3/CCO::Util::SynonymTypeDefSet.3 Manifying blib/man3/CCO::Util::XMLIntactParser.3 Manifying blib/man3/CCO::Util::Ontolome.3 Manifying blib/man3/CCO::Core::Def.3 Manifying blib/man3/CCO::Core::IDspace.3 Manifying blib/man3/CCO::Util::TermSet.3 Manifying blib/man3/onto-perl.3 [ERROR] [Fri Nov 23 21:27:00 2007] MAKE TEST failed: PERL_DL_NONLAZY=1 /home/cpan/perl581/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/CCO_ID...............ok t/CCO_ID_Set...........ok t/CCO_ID_Term_Map......ok t/Dbxref...............ok t/DbxrefSet............ok t/Def..................ok t/GoaAssociation.......ok t/GoaAssociationSet....ok t/GoaParser............ok t/IDspace..............ok t/IntActParser.........ok 6/7 skipped: various reasons t/NCBIParser...........ok t/NewIntActParser......ok 7/8 skipped: various reasons t/OBOParser............ok t/Ontology.............ok t/Ontolome.............ok t/OrthoMCLParser.......ok t/OWLParser............ok 6/6 skipped: various reasons t/Relationship.........ok t/RelationshipType.....# Failed test 23 in t/RelationshipType.t at line 115 # t/RelationshipType.t line 115 is: ok(($r2->synonym_as_string())[0] eq "\"part_of\" [CCO:ls, CCO:vm]"); # Failed test 24 in t/RelationshipType.t at line 117 # t/RelationshipType.t line 117 is: ok(($r2->synonym_as_string())[0] eq "\"part_of\" [CCO:ls, CCO:vm]"); # Failed test 25 in t/RelationshipType.t at line 118 # t/RelationshipType.t line 118 is: ok(($r2->synonym_as_string())[1] eq "\"part_of\" [CCO:ls2, CCO:vm2]"); FAILED tests 23-25 Failed 3/39 tests, 92.31% okay t/Set..................ok t/Synonym..............ok t/SynonymSet...........ok t/SynonymTypeDef.......ok t/SynonymTypeDefSet....ok t/Term.................# Failed test 45 in t/Term.t at line 139 # t/Term.t line 139 is: ok(($n2->synonym_as_string())[0] eq "\"Hola mundo2\" [CCO:ls, CCO:vm]"); # Failed test 46 in t/Term.t at line 141 # t/Term.t line 141 is: ok(($n2->synonym_as_string())[0] eq "\"Hello world2\" [CCO:ls2, CCO:vm2]"); # Failed test 47 in t/Term.t at line 142 # t/Term.t line 142 is: ok(($n2->synonym_as_string())[1] eq "\"Hola mundo2\" [CCO:ls, CCO:vm]"); FAILED tests 45-47 Failed 3/66 tests, 95.45% okay t/TermSet..............ok t/UniProtParser........ok 12/12 skipped: various reasons Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/RelationshipType.t 39 3 23-25 t/Term.t 66 3 45-47 31 subtests skipped. Failed 2/28 test scripts. 6/742 subtests failed. Files=28, Tests=742, 20 wallclock secs (18.80 cusr + 0.76 csys = 19.56 CPU) Failed 2/28 test programs. 6/742 subtests failed. gmake: [MSG] [Fri Nov 23 21:27:00 2007] DEFAULT 'proceed_on_test_failure' HANDLER RETURNING 'sub return value' ******************************** NOTE ******************************** The comments above are created mechanically, possibly without manual checking by the sender. As there are many people performing automatic tests on each upload to CPAN, it is likely that you will receive identical messages about the same problem. If you believe that the message is mistaken, please reply to the first one with correction and/or additional informations, and do not take it personally. We appreciate your patience. :) ********************************************************************** Additional comments: This report was machine-generated by CPAN::YACSmoke 0.0307. ------------------------------ ENVIRONMENT AND OTHER CONTEXT ------------------------------ Environment variables: AUTOMATED_TESTING = 1 PATH = /home/cpan/bin:/bin:/sbin:/usr/bin:/usr/sbin:/usr/X11R6/bin:/usr/pkg/bin:/usr/pkg/sbin:/usr/games:/usr/local/bin:/usr/local/sbin PERL5LIB = :/home/cpan/perl581/.cpanplus/5.8.1/build/onto-perl-1.03/blib/lib:/home/cpan/perl581/.cpanplus/5.8.1/build/onto-perl-1.03/blib/arch:/home/cpan/perl581/.cpanplus/5.8.1/build/onto-perl-1.03/blib PERL5_CPANPLUS_IS_RUNNING = 21442 PERL5_CPANPLUS_IS_VERSION = 0.80 PERL_MM_USE_DEFAULT = 1 SHELL = /usr/pkg/bin/bash TERM = screen Perl special variables (and OS-specific diagnostics, for MSWin32): Perl: $^X = /home/cpan/perl581/bin/perl UID: $< = 1002 EUID: $> = 1002 GID: $( = 100 100 EGID: $) = 100 100 ------------------------------- -- Summary of my perl5 (revision 5.0 version 8 subversion 1) configuration: Platform: osname=netbsd, osvers=3.1, archname=i386-netbsd-thread-multi-64int uname='netbsd canker.bingosnet.co.uk 3.1 netbsd 3.1 (generic_laptop) #0: tue oct 31 04:32:05 utc 2006 [EMAIL PROTECTED]:homebuildsabnetbsd-3-1-releasei386200610302053z-objhomebuildsabnetbsd-3-1-releasesrcsysarchi386compilegeneric_laptop i386 ' config_args='' hint=recommended, useposix=true, d_sigaction=define usethreads=define use5005threads=undef useithreads=define usemultiplicity=define useperlio=define d_sfio=undef uselargefiles=define usesocks=undef use64bitint=define use64bitall=undef uselongdouble=undef usemymalloc=n, bincompat5005=undef Compiler: cc='cc', ccflags ='-fno-strict-aliasing -I/usr/pkg/include', optimize='-O', cppflags='-fno-strict-aliasing -I/usr/pkg/include' ccversion='', gccversion='3.3.3 (NetBSD nb3 20040520)', gccosandvers='' intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=12345678 d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12 ivtype='long long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8 alignbytes=4, prototype=define Linker and Libraries: ld='cc', ldflags =' -Wl,-rpath,/usr/pkg/lib -Wl,-rpath,/usr/local/lib -L/usr/pkg/lib' libpth=/usr/pkg/lib /lib /usr/lib libs=-lgdbm -lm -lcrypt -lutil -lc -lposix -lpthread perllibs=-lm -lcrypt -lutil -lc -lposix -lpthread libc=/lib/libc.so, so=so, useshrplib=false, libperl=libperl.a gnulibc_version='' Dynamic Linking: dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E ' cccdlflags='-DPIC -fPIC ', lddlflags='--whole-archive -shared -L/usr/pkg/lib'
