Shawn Smith created CRUNCH-47:
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             Summary: Inputs and outputs can't use non-default Hadoop FileSystem
                 Key: CRUNCH-47
                 URL: https://issues.apache.org/jira/browse/CRUNCH-47
             Project: Crunch
          Issue Type: Bug
          Components: IO
    Affects Versions: 0.3.0
         Environment: Elastic MapReduce Hadoop 1.0.3
            Reporter: Shawn Smith


I'm getting the following exception trying to use Crunch with Elastic MapReduce 
where input and output files use the Native S3 FileSystem and intermediate 
files use HDFS.  HDFS is configured as the default file system:

Exception in thread "main" java.lang.IllegalArgumentException: This file system 
object (hdfs://10.114.37.65:9000) does not support access to the request path 
's3n://test-bucket/test/Input.avro' You possibly called FileSystem.get(conf) 
when you should have called FileSystem.get(uri, conf) to obtain a file system 
supporting your path.
        at org.apache.hadoop.fs.FileSystem.checkPath(FileSystem.java:381)
        at 
org.apache.hadoop.hdfs.DistributedFileSystem.getPathName(DistributedFileSystem.java:129)
        at 
org.apache.hadoop.hdfs.DistributedFileSystem.getFileStatus(DistributedFileSystem.java:513)
        at org.apache.hadoop.fs.FileSystem.exists(FileSystem.java:767)
        at 
org.apache.crunch.io.SourceTargetHelper.getPathSize(SourceTargetHelper.java:44)

It looks like Crunch has a number of calls to FileSystem.get(Configuration) 
that assume the default configured file system and fail with an S3 input or 
output.

Also, CrunchJob.handleMultiPaths() calls FileSystem.rename() which works only 
if the source and destination use the same file system.  This breaks the final 
upload of the output files from HDFS to S3.

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