Pei Chen created CTAKES-15:
------------------------------
Summary: Runtime exception for certain documents with Assertion
module
Key: CTAKES-15
URL: https://issues.apache.org/jira/browse/CTAKES-15
Project: cTAKES
Issue Type: Bug
Components: ctakes-assertion
Affects Versions: 2.6-incubating
Reporter: Pei Chen
Priority: Minor
Fix For: 2.6-incubating
Sample text to recreate this:
HISTORY:
blah blah
REPORT:
blah blah
IMPRESSION
blah blah
REPORT 2:
61172
Addendum:
Caused by: java.lang.RuntimeException: First token in sentence not found!!
at
org.mitre.medfacts.i2b2.api.ctakes.CharacterOffsetToLineTokenConverterCtakesImpl.convertCharacterOffsetToLineToken(CharacterOffsetToLineTokenConverterCtakesImpl.java:183)
~[cTAKES-2.5.0.jar:na]
at
org.mitre.medfacts.i2b2.api.ctakes.CharacterOffsetToLineTokenConverterCtakesImpl.convert(CharacterOffsetToLineTokenConverterCtakesImpl.java:107)
~[cTAKES-2.5.0.jar:na]
at org.mitre.medfacts.zoner.ZonerCli.findHeadings(ZonerCli.java:545)
~[med-facts-zoner-1.1.jar:na]
at
org.mitre.medfacts.i2b2.cli.MedFactsRunner.findZones(MedFactsRunner.java:212)
~[med-facts-i2b2-1.2-SNAPSHOT.jar:na]
at
org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processZones(SingleDocumentProcessor.java:449)
~[med-facts-i2b2-1.2-SNAPSHOT.jar:na]
at
org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.generateAnnotations(SingleDocumentProcessor.java:173)
~[med-facts-i2b2-1.2-SNAPSHOT.jar:na]
at
org.mitre.medfacts.i2b2.api.SingleDocumentProcessor.processSingleDocument(SingleDocumentProcessor.java:97)
~[med-facts-i2b2-1.2-SNAPSHOT.jar:na]
at
org.mitre.medfacts.uima.assertion.AssertionAnalysisEngine.process(AssertionAnalysisEngine.java:213)
~[cTAKES-2.5.0.jar:na]
at
org.apache.uima.analysis_component.JCasAnnotator_ImplBase.process(JCasAnnotator_ImplBase.java:48)
~[uimaj-core-2.4.0.jar:2.4.0]
at
org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
~[uimaj-core-2.4.0.jar:2.4.0]
... 6 common frames omitted
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