edwin 2008-05-24 07:03:23 UTC FreeBSD ports repository
Modified files: biology Makefile Added files: biology/phrap Makefile distinfo pkg-descr biology/phrap/files patch-makefile Log: New port: biology/consed viewing and editing workbench for sequence assembly Consed is a tool for viewing, editing, and finishing sequence assemblies. The port is constituted of 4 parts: biology/phred: base caller with quality evaluation biology/phrap: sequence assembler for shotgun sequencing biology/consed: workbench biology/phd2fasta: small utility All these can be used separately; however, most function of consed depends on the others. Although these programs are licensed freely for academic and nonprofit purposes, users have to contact the authors to get the softwares. Phred (including phd2fasta) and phrap are emailed, and consed can be downloaded to a restricted IP address. For commercial users, the licensing fee is ca. $10,000 at the time of writing. PR: ports/118548 Submitted by: Motomichi Matsuzaki <[EMAIL PROTECTED]> Revision Changes Path 1.100 +1 -0 ports/biology/Makefile 1.1 +62 -0 ports/biology/phrap/Makefile (new) 1.1 +3 -0 ports/biology/phrap/distinfo (new) 1.1 +27 -0 ports/biology/phrap/files/patch-makefile (new) 1.1 +21 -0 ports/biology/phrap/pkg-descr (new) _______________________________________________ cvs-all@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/cvs-all To unsubscribe, send any mail to "[EMAIL PROTECTED]"