Author: kono
Date: 2009-05-28 13:50:05 -0700 (Thu, 28 May 2009)
New Revision: 16836
Modified:
cytoscape3/trunk/pom.xml
cytoscape3/trunk/provision/pom.xml
Log:
VizMap GUI activated.
Modified: cytoscape3/trunk/pom.xml
===================================================================
--- cytoscape3/trunk/pom.xml 2009-05-28 20:48:27 UTC (rev 16835)
+++ cytoscape3/trunk/pom.xml 2009-05-28 20:50:05 UTC (rev 16836)
@@ -205,13 +205,10 @@
<configuration>
<!-- some example Pax-Runner settings
-->
<provision>
- <param>--platform=felix</param>
+
<param>--platform=equinox</param>
+ <param>--profiles=log</param>
<param>--noDownloadFeedback</param>
- <param>--vmOptions=-Xmx512M
-
-Dapple.laf.useScreenMenuBar=true
-
-Dapple.awt.fileDialogForDirectories=true
-
-Dapple.awt.graphics.UseQuartz=true
-
-Dcom.apple.mrj.application.apple.menu.about.name=Cytoscape3</param>
+ <param>--vmOptions=-Xmx512M
-Dawt.useSystemAAFontSettings=lcd
-Dswing.defaultlaf=com.sun.java.swing.plaf.nimbus.NimbusLookAndFeel
-Dapple.laf.useScreenMenuBar=true -Dapple.awt.fileDialogForDirectories=true
-Dapple.awt.graphics.UseQuartz=true
-Dcom.apple.mrj.application.apple.menu.about.name=Cytoscape3</param>
<param>--repositories=+http://scm.ops4j.org/repos/ops4j/projects/pax/runner-repository/</param>
</provision>
</configuration>
Modified: cytoscape3/trunk/provision/pom.xml
===================================================================
--- cytoscape3/trunk/provision/pom.xml 2009-05-28 20:48:27 UTC (rev 16835)
+++ cytoscape3/trunk/provision/pom.xml 2009-05-28 20:50:05 UTC (rev 16836)
@@ -1,268 +1,336 @@
<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
xmlns="http://maven.apache.org/POM/4.0.0";
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
+<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance";
+ xmlns="http://maven.apache.org/POM/4.0.0";
+ xsi:schemaLocation="http://maven.apache.org/POM/4.0.0
http://maven.apache.org/maven-v4_0_0.xsd";>
- <parent>
- <groupId>cytoscape</groupId>
- <artifactId>core</artifactId>
- <version>1.0-SNAPSHOT</version>
- </parent>
+ <parent>
+ <groupId>cytoscape</groupId>
+ <artifactId>core</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </parent>
- <modelVersion>4.0.0</modelVersion>
- <groupId>cytoscape.core.build</groupId>
- <artifactId>provision</artifactId>
+ <modelVersion>4.0.0</modelVersion>
+ <groupId>cytoscape.core.build</groupId>
+ <artifactId>provision</artifactId>
- <name>core - imported bundles</name>
+ <name>core - imported bundles</name>
- <packaging>pom</packaging>
+ <packaging>pom</packaging>
- <!--
+ <!--
| imported (non-local) bundles are listed here as dependencies
| and
will be deployed by pax:provision unless they are marked | with
<optional>true</optional>
-->
- <dependencies>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-aop</artifactId>
- <version>${spring.version}</version>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-beans</artifactId>
- <version>${spring.version}</version>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-context</artifactId>
- <version>${spring.version}</version>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-core</artifactId>
- <version>${spring.version}</version>
- </dependency>
- <dependency>
- <groupId>org.aopalliance</groupId>
- <artifactId>com.springsource.org.aopalliance</artifactId>
- <version>1.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.osgi</groupId>
- <artifactId>spring-osgi-extender</artifactId>
- <version>${spring.osgi.version}</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.osgi</groupId>
- <artifactId>spring-osgi-core</artifactId>
- <version>${spring.osgi.version}</version>
- </dependency>
- <dependency>
- <groupId>org.springframework.osgi</groupId>
- <artifactId>spring-osgi-io</artifactId>
- <version>${spring.osgi.version}</version>
- </dependency>
- <dependency>
- <groupId>org.slf4j</groupId>
-
<artifactId>com.springsource.slf4j.org.apache.commons.logging</artifactId>
- <version>1.5.0</version>
- </dependency>
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>com.springsource.slf4j.api</artifactId>
- <version>1.5.0</version>
- </dependency>
- <dependency>
- <groupId>org.slf4j</groupId>
- <artifactId>com.springsource.slf4j.log4j</artifactId>
- <version>1.5.0</version>
- </dependency>
- <dependency>
- <groupId>edu.emory.mathcs.backport</groupId>
- <artifactId>com.springsource.edu.emory.mathcs.backport</artifactId>
- <version>3.1.0</version>
- </dependency>
- <dependency>
- <groupId>org.apache.log4j</groupId>
- <artifactId>com.springsource.org.apache.log4j</artifactId>
- <version>1.2.15</version>
- </dependency>
- <dependency>
- <groupId>javax.annotation</groupId>
- <artifactId>com.springsource.javax.annotation</artifactId>
- <version>1.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.jdom</groupId>
- <artifactId>com.springsource.org.jdom</artifactId>
- <version>1.0.0</version>
- </dependency>
- <dependency>
- <groupId>edu.oswego.cs.concurrent</groupId>
-
<artifactId>com.springsource.edu.oswego.cs.dl.util.concurrent</artifactId>
- <version>1.3.4</version>
- </dependency>
- <dependency>
- <groupId>javax.xml.bind</groupId>
- <artifactId>com.springsource.javax.xml.bind</artifactId>
- <version>2.1.7</version>
- </dependency>
- <dependency>
- <groupId>com.sun.xml</groupId>
- <artifactId>com.springsource.com.sun.xml.bind</artifactId>
- <version>2.1.7</version>
- </dependency>
- <dependency>
- <groupId>com.sun.xml</groupId>
- <artifactId>com.springsource.com.sun.xml.fastinfoset</artifactId>
- <version>1.2.2</version>
- </dependency>
- <dependency>
- <groupId>javax.activation</groupId>
- <artifactId>com.springsource.javax.activation</artifactId>
- <version>1.1.1</version>
- </dependency>
- <dependency>
- <groupId>javax.xml.stream</groupId>
- <artifactId>com.springsource.javax.xml.stream</artifactId>
- <version>1.0.1</version>
- </dependency>
- <dependency>
- <groupId>org.jvnet.staxex</groupId>
- <artifactId>com.springsource.org.jvnet.staxex</artifactId>
- <version>1.0.0</version>
- </dependency>
- <dependency>
- <groupId>org.ops4j.pax.logging</groupId>
- <artifactId>pax-logging-api</artifactId>
- <version>1.3.0</version>
- </dependency>
- <dependency>
- <groupId>org.ops4j.pax.logging</groupId>
- <artifactId>pax-logging-service</artifactId>
- <version>1.3.0</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>model-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.springframework</groupId>
- <artifactId>spring-test</artifactId>
- <version>${spring.version}</version>
- </dependency>
- <dependency>
- <groupId>org.apache.commons</groupId>
- <artifactId>com.springsource.org.apache.commons.lang</artifactId>
- <version>2.4.0</version>
- </dependency>
- <dependency>
- <groupId>javax.jms</groupId>
- <artifactId>com.springsource.javax.jms</artifactId>
- <version>1.1.0</version>
- </dependency>
- <dependency>
- <groupId>javax.transaction</groupId>
- <artifactId>com.springsource.javax.transaction</artifactId>
- <version>1.1.0</version>
- </dependency>
- <dependency>
- <groupId>com.lowagie.text</groupId>
- <artifactId>com.springsource.com.lowagie.text</artifactId>
- <version>2.0.8</version>
- </dependency>
- <dependency>
- <groupId>org.aspectj</groupId>
- <artifactId>com.springsource.org.aspectj.weaver</artifactId>
- <version>1.6.3.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>org.aspectj</groupId>
- <artifactId>com.springsource.org.aspectj.runtime</artifactId>
- <version>1.6.3.RELEASE</version>
- </dependency>
- <dependency>
- <groupId>net.sourceforge.cglib</groupId>
- <artifactId>com.springsource.net.sf.cglib</artifactId>
- <version>2.1.3</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>model-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>work-swing-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
+ <dependencies>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-aop</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-beans</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-context</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-core</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.aopalliance</groupId>
+ <artifactId>com.springsource.org.aopalliance
+ </artifactId>
+ <version>1.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.osgi</groupId>
+ <artifactId>spring-osgi-extender</artifactId>
+ <version>${spring.osgi.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.osgi</groupId>
+ <artifactId>spring-osgi-core</artifactId>
+ <version>${spring.osgi.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework.osgi</groupId>
+ <artifactId>spring-osgi-io</artifactId>
+ <version>${spring.osgi.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+
<artifactId>com.springsource.slf4j.org.apache.commons.logging
+ </artifactId>
+ <version>1.5.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>com.springsource.slf4j.api
+ </artifactId>
+ <version>1.5.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.slf4j</groupId>
+ <artifactId>com.springsource.slf4j.log4j
+ </artifactId>
+ <version>1.5.0</version>
+ </dependency>
+ <dependency>
+ <groupId>edu.emory.mathcs.backport</groupId>
+ <artifactId>com.springsource.edu.emory.mathcs.backport
+ </artifactId>
+ <version>3.1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.log4j</groupId>
+ <artifactId>com.springsource.org.apache.log4j
+ </artifactId>
+ <version>1.2.15</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.annotation</groupId>
+ <artifactId>com.springsource.javax.annotation
+ </artifactId>
+ <version>1.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.jdom</groupId>
+ <artifactId>com.springsource.org.jdom
+ </artifactId>
+ <version>1.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>edu.oswego.cs.concurrent</groupId>
+
<artifactId>com.springsource.edu.oswego.cs.dl.util.concurrent
+ </artifactId>
+ <version>1.3.4</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.xml.bind</groupId>
+ <artifactId>com.springsource.javax.xml.bind
+ </artifactId>
+ <version>2.1.7</version>
+ </dependency>
+ <dependency>
+ <groupId>com.sun.xml</groupId>
+ <artifactId>com.springsource.com.sun.xml.bind
+ </artifactId>
+ <version>2.1.7</version>
+ </dependency>
+ <dependency>
+ <groupId>com.sun.xml</groupId>
+ <artifactId>com.springsource.com.sun.xml.fastinfoset
+ </artifactId>
+ <version>1.2.2</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.activation</groupId>
+ <artifactId>com.springsource.javax.activation
+ </artifactId>
+ <version>1.1.1</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.xml.stream</groupId>
+ <artifactId>com.springsource.javax.xml.stream
+ </artifactId>
+ <version>1.0.1</version>
+ </dependency>
+ <dependency>
+ <groupId>org.jvnet.staxex</groupId>
+ <artifactId>com.springsource.org.jvnet.staxex
+ </artifactId>
+ <version>1.0.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.ops4j.pax.logging</groupId>
+ <artifactId>pax-logging-api</artifactId>
+ <version>1.3.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.ops4j.pax.logging</groupId>
+ <artifactId>pax-logging-service</artifactId>
+ <version>1.3.0</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>model-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.springframework</groupId>
+ <artifactId>spring-test</artifactId>
+ <version>${spring.version}</version>
+ </dependency>
+ <dependency>
+ <groupId>org.apache.commons</groupId>
+ <artifactId>com.springsource.org.apache.commons.lang
+ </artifactId>
+ <version>2.4.0</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.jms</groupId>
+ <artifactId>com.springsource.javax.jms
+ </artifactId>
+ <version>1.1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>javax.transaction</groupId>
+ <artifactId>com.springsource.javax.transaction
+ </artifactId>
+ <version>1.1.0</version>
+ </dependency>
+ <dependency>
+ <groupId>com.lowagie.text</groupId>
+ <artifactId>com.springsource.com.lowagie.text
+ </artifactId>
+ <version>2.0.8</version>
+ </dependency>
+ <dependency>
+ <groupId>org.aspectj</groupId>
+ <artifactId>com.springsource.org.aspectj.weaver
+ </artifactId>
+ <version>1.6.3.RELEASE</version>
+ </dependency>
+ <dependency>
+ <groupId>org.aspectj</groupId>
+ <artifactId>com.springsource.org.aspectj.runtime
+ </artifactId>
+ <version>1.6.3.RELEASE</version>
+ </dependency>
+ <dependency>
+ <groupId>net.sourceforge.cglib</groupId>
+ <artifactId>com.springsource.net.sf.cglib
+ </artifactId>
+ <version>2.1.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>model-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>work-swing-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>core-task-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <!-- session-api is here because of core-task-impl - not sure why
pax:run
- isn't pulling this in automatically. This should go away when we
- figure this out. -->
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>session-api</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>core-task-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <!--
+ session-api is here because of core-task-impl - not
sure why pax:run
+ isn't pulling this in automatically. This should go
away when we
+ figure this out.
+ -->
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>session-api</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>io-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>work-spring-hack</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>viewmodel-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>vizmap-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>io-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>work-spring-hack</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>viewmodel-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>vizmap-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
- <!-- BEGIN presentation -->
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>graph-render</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>util-intr</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>spacial</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>ding-presentation-impl</artifactId>
- <version>1.0-SNAPSHOT</version>
- </dependency>
- <!-- END presentation -->
+ <!-- BEGIN presentation -->
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>graph-render</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>util-intr</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>spacial</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>ding-presentation-impl</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+ <!-- END presentation -->
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>vizmap-gui</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+
+ <dependency>
+ <groupId>org.cytoscape</groupId>
+ <artifactId>default-mappings</artifactId>
+ <version>1.0-SNAPSHOT</version>
+ </dependency>
+
+ <!-- Wrapped libraries -->
+ <dependency>
+ <groupId>org.cytoscape.wrappers</groupId>
+ <artifactId>com.l2fprod.common.sheet
+ </artifactId>
+ <version>7.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape.wrappers</groupId>
+ <artifactId>org.swinglabs.swingx</artifactId>
+ <version>0.9.7</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape.wrappers</groupId>
+ <artifactId>org.swinglabs.swing-layout
+ </artifactId>
+ <version>1.0.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape.wrappers</groupId>
+ <artifactId>com.l2fprod.common.shared
+ </artifactId>
+ <version>7.3</version>
+ </dependency>
+ <dependency>
+ <groupId>org.cytoscape.wrappers</groupId>
+ <artifactId>com.l2fprod.common.fontchooser
+ </artifactId>
+ <version>7.3</version>
+ </dependency>
<dependency>
<groupId>org.cytoscape</groupId>
<artifactId>log-swing</artifactId>
<version>1.0-SNAPSHOT</version>
</dependency>
- </dependencies>
+ </dependencies>
</project>
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