Author: chinmoy
Date: 2009-08-07 15:34:28 -0700 (Fri, 07 Aug 2009)
New Revision: 17742
Removed:
csplugins/trunk/soc/chinmoy/phylotree/phyloVizMap.props
Modified:
csplugins/trunk/soc/chinmoy/phylotree/build.xml
csplugins/trunk/soc/chinmoy/phylotree/src/org/cytoscape/phylotree/actions/PhyloTreeImportAction.java
Log:
Modified: csplugins/trunk/soc/chinmoy/phylotree/build.xml
===================================================================
--- csplugins/trunk/soc/chinmoy/phylotree/build.xml 2009-08-07 22:29:47 UTC
(rev 17741)
+++ csplugins/trunk/soc/chinmoy/phylotree/build.xml 2009-08-07 22:34:28 UTC
(rev 17742)
@@ -110,6 +110,7 @@
<!-- If plugin.prop exist, copy it to build directory -->
<target name="copy_plugin_prop" if="plugin.prop.present">
<copy todir="${build.dir}/org/cytoscape/phylotree"
file="${root.dir}/plugin.props"/>
+
</target>
<!-- If there are any image files, copy them to build directory -->
Deleted: csplugins/trunk/soc/chinmoy/phylotree/phyloVizMap.props
===================================================================
--- csplugins/trunk/soc/chinmoy/phylotree/phyloVizMap.props 2009-08-07
22:29:47 UTC (rev 17741)
+++ csplugins/trunk/soc/chinmoy/phylotree/phyloVizMap.props 2009-08-07
22:34:28 UTC (rev 17742)
@@ -1,517 +0,0 @@
-#This file specifies visual mappings for Cytoscape and has been automatically
generated.
-# WARNING: any changes you make to this file while Cytoscape is running may be
overwritten.
-# Any changes may make these visual mappings unreadable.
-# Please make sure you know what you are doing before modifying this file by
hand.
-#
-#Fri Jul 24 06:16:38 EDT 2009
-edgeAppearanceCalculator.Phylotree.defaultEdgeColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultEdgeFont=SanSerif,plain,10
-edgeAppearanceCalculator.Phylotree.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.Phylotree.defaultEdgeLabel=
-edgeAppearanceCalculator.Phylotree.defaultEdgeLabelColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultEdgeLabelOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Phylotree.defaultEdgeLineStyle=SOLID
-edgeAppearanceCalculator.Phylotree.defaultEdgeLineWidth=1.0
-edgeAppearanceCalculator.Phylotree.defaultEdgeOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.Phylotree.defaultEdgeToolTip=
-edgeAppearanceCalculator.Phylotree.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.Phylotree.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.Phylotree.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.Phylotree.defaultNodeHight=30.0
-edgeAppearanceCalculator.Phylotree.defaultNodeLabel=
-edgeAppearanceCalculator.Phylotree.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.Phylotree.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Phylotree.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.Phylotree.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.Phylotree.defaultNodeOpacity=255
-edgeAppearanceCalculator.Phylotree.defaultNodeShape=rect
-edgeAppearanceCalculator.Phylotree.defaultNodeSize=35.0
-edgeAppearanceCalculator.Phylotree.defaultNodeToolTip=
-edgeAppearanceCalculator.Phylotree.defaultNodeWidth=70.0
-edgeAppearanceCalculator.Phylotree.nodeSizeLocked=true
-edgeAppearanceCalculator.Sample1.defaultEdgeColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultEdgeFont=Default,plain,10
-edgeAppearanceCalculator.Sample1.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.Sample1.defaultEdgeLabel=
-edgeAppearanceCalculator.Sample1.defaultEdgeLabelColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultEdgeLabelOpacity=255
-edgeAppearanceCalculator.Sample1.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Sample1.defaultEdgeLineStyle=SOLID
-edgeAppearanceCalculator.Sample1.defaultEdgeLineWidth=1.0
-edgeAppearanceCalculator.Sample1.defaultEdgeOpacity=255
-edgeAppearanceCalculator.Sample1.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.Sample1.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.Sample1.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.Sample1.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.Sample1.defaultEdgeToolTip=
-edgeAppearanceCalculator.Sample1.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.Sample1.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.Sample1.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.Sample1.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.Sample1.defaultNodeHight=30.0
-edgeAppearanceCalculator.Sample1.defaultNodeLabel=
-edgeAppearanceCalculator.Sample1.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.Sample1.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.Sample1.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Sample1.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.Sample1.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.Sample1.defaultNodeOpacity=255
-edgeAppearanceCalculator.Sample1.defaultNodeShape=rect
-edgeAppearanceCalculator.Sample1.defaultNodeSize=35.0
-edgeAppearanceCalculator.Sample1.defaultNodeToolTip=
-edgeAppearanceCalculator.Sample1.defaultNodeWidth=70.0
-edgeAppearanceCalculator.Sample1.edgeColorCalculator=BasicDiscrete
-edgeAppearanceCalculator.Sample1.edgeLabelCalculator=EdgeLabel
-edgeAppearanceCalculator.Sample1.edgeLineStyleCalculator=Sample1-Edge Line
Style-Discrete Mapper
-edgeAppearanceCalculator.Sample1.nodeSizeLocked=true
-edgeAppearanceCalculator.Solid.defaultEdgeColor=204,204,204
-edgeAppearanceCalculator.Solid.defaultEdgeFont=SanSerif,plain,10
-edgeAppearanceCalculator.Solid.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.Solid.defaultEdgeLabel=
-edgeAppearanceCalculator.Solid.defaultEdgeLabelColor=102,102,102
-edgeAppearanceCalculator.Solid.defaultEdgeLabelOpacity=190
-edgeAppearanceCalculator.Solid.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Solid.defaultEdgeLineStyle=SOLID
-edgeAppearanceCalculator.Solid.defaultEdgeLineWidth=12.0
-edgeAppearanceCalculator.Solid.defaultEdgeOpacity=255
-edgeAppearanceCalculator.Solid.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.Solid.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.Solid.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.Solid.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.Solid.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.Solid.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.Solid.defaultEdgeToolTip=
-edgeAppearanceCalculator.Solid.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.Solid.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.Solid.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.Solid.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.Solid.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.Solid.defaultNodeHight=30.0
-edgeAppearanceCalculator.Solid.defaultNodeLabel=
-edgeAppearanceCalculator.Solid.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.Solid.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.Solid.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Solid.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.Solid.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.Solid.defaultNodeOpacity=255
-edgeAppearanceCalculator.Solid.defaultNodeShape=rect
-edgeAppearanceCalculator.Solid.defaultNodeSize=35.0
-edgeAppearanceCalculator.Solid.defaultNodeToolTip=
-edgeAppearanceCalculator.Solid.defaultNodeWidth=70.0
-edgeAppearanceCalculator.Solid.edgeLabelCalculator=Solid-Edge
Label-Passthrough Mapper
-edgeAppearanceCalculator.Solid.nodeSizeLocked=true
-edgeAppearanceCalculator.Universe.defaultEdgeColor=255,255,255
-edgeAppearanceCalculator.Universe.defaultEdgeFont=SanSerif,plain,10
-edgeAppearanceCalculator.Universe.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.Universe.defaultEdgeLabel=
-edgeAppearanceCalculator.Universe.defaultEdgeLabelColor=0,0,0
-edgeAppearanceCalculator.Universe.defaultEdgeLabelOpacity=255
-edgeAppearanceCalculator.Universe.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Universe.defaultEdgeLineStyle=LONG_DASH
-edgeAppearanceCalculator.Universe.defaultEdgeLineWidth=3.0
-edgeAppearanceCalculator.Universe.defaultEdgeOpacity=100
-edgeAppearanceCalculator.Universe.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.Universe.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.Universe.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.Universe.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.Universe.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.Universe.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.Universe.defaultEdgeToolTip=
-edgeAppearanceCalculator.Universe.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.Universe.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.Universe.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.Universe.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.Universe.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.Universe.defaultNodeHight=30.0
-edgeAppearanceCalculator.Universe.defaultNodeLabel=
-edgeAppearanceCalculator.Universe.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.Universe.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.Universe.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.Universe.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.Universe.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.Universe.defaultNodeOpacity=255
-edgeAppearanceCalculator.Universe.defaultNodeShape=rect
-edgeAppearanceCalculator.Universe.defaultNodeSize=35.0
-edgeAppearanceCalculator.Universe.defaultNodeToolTip=
-edgeAppearanceCalculator.Universe.defaultNodeWidth=70.0
-edgeAppearanceCalculator.Universe.nodeSizeLocked=true
-edgeAppearanceCalculator.default.defaultEdgeColor=0,0,0
-edgeAppearanceCalculator.default.defaultEdgeFont=Default,plain,10
-edgeAppearanceCalculator.default.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.default.defaultEdgeLabel=
-edgeAppearanceCalculator.default.defaultEdgeLabelColor=0,0,0
-edgeAppearanceCalculator.default.defaultEdgeLabelOpacity=255
-edgeAppearanceCalculator.default.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.default.defaultEdgeLineStyle=SOLID
-edgeAppearanceCalculator.default.defaultEdgeLineWidth=1.5
-edgeAppearanceCalculator.default.defaultEdgeOpacity=255
-edgeAppearanceCalculator.default.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.default.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.default.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.default.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.default.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.default.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.default.defaultEdgeToolTip=
-edgeAppearanceCalculator.default.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.default.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.default.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.default.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.default.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.default.defaultNodeHight=30.0
-edgeAppearanceCalculator.default.defaultNodeLabel=
-edgeAppearanceCalculator.default.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.default.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.default.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.default.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.default.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.default.defaultNodeOpacity=255
-edgeAppearanceCalculator.default.defaultNodeShape=rect
-edgeAppearanceCalculator.default.defaultNodeSize=35.0
-edgeAppearanceCalculator.default.defaultNodeToolTip=
-edgeAppearanceCalculator.default.defaultNodeWidth=70.0
-edgeAppearanceCalculator.default.nodeSizeLocked=true
-edgeAppearanceCalculator.phylotree.defaultEdgeColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultEdgeFont=Default,plain,10
-edgeAppearanceCalculator.phylotree.defaultEdgeFontSize=10.0
-edgeAppearanceCalculator.phylotree.defaultEdgeLabel=
-edgeAppearanceCalculator.phylotree.defaultEdgeLabelColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultEdgeLabelOpacity=255
-edgeAppearanceCalculator.phylotree.defaultEdgeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.phylotree.defaultEdgeLineStyle=SOLID
-edgeAppearanceCalculator.phylotree.defaultEdgeLineWidth=1.5
-edgeAppearanceCalculator.phylotree.defaultEdgeOpacity=255
-edgeAppearanceCalculator.phylotree.defaultEdgeSourceArrowColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultEdgeSourceArrowOpacity=255
-edgeAppearanceCalculator.phylotree.defaultEdgeSourceArrowShape=NONE
-edgeAppearanceCalculator.phylotree.defaultEdgeTargetArrowColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultEdgeTargetArrowOpacity=255
-edgeAppearanceCalculator.phylotree.defaultEdgeTargetArrowShape=NONE
-edgeAppearanceCalculator.phylotree.defaultEdgeToolTip=
-edgeAppearanceCalculator.phylotree.defaultNodeBorderColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultNodeBorderOpacity=255
-edgeAppearanceCalculator.phylotree.defaultNodeFillColor=255,255,255
-edgeAppearanceCalculator.phylotree.defaultNodeFont=Default,plain,12
-edgeAppearanceCalculator.phylotree.defaultNodeFontSize=12.0
-edgeAppearanceCalculator.phylotree.defaultNodeHight=30.0
-edgeAppearanceCalculator.phylotree.defaultNodeLabel=
-edgeAppearanceCalculator.phylotree.defaultNodeLabelColor=0,0,0
-edgeAppearanceCalculator.phylotree.defaultNodeLabelOpacity=255
-edgeAppearanceCalculator.phylotree.defaultNodeLabelPosition=C,C,c,0,0
-edgeAppearanceCalculator.phylotree.defaultNodeLineStyle=SOLID
-edgeAppearanceCalculator.phylotree.defaultNodeLineWidth=1.0
-edgeAppearanceCalculator.phylotree.defaultNodeOpacity=255
-edgeAppearanceCalculator.phylotree.defaultNodeShape=rect
-edgeAppearanceCalculator.phylotree.defaultNodeSize=35.0
-edgeAppearanceCalculator.phylotree.defaultNodeToolTip=
-edgeAppearanceCalculator.phylotree.defaultNodeWidth=70.0
-edgeAppearanceCalculator.phylotree.nodeSizeLocked=true
-edgeColorCalculator.BasicDiscrete.mapping.controller=interaction
-edgeColorCalculator.BasicDiscrete.mapping.controllerType=4
-edgeColorCalculator.BasicDiscrete.mapping.map.pd=255,0,51
-edgeColorCalculator.BasicDiscrete.mapping.map.pp=0,204,0
-edgeColorCalculator.BasicDiscrete.mapping.type=DiscreteMapping
-edgeColorCalculator.BasicDiscrete.visualPropertyType=EDGE_COLOR
-edgeLabelCalculator.EdgeLabel.mapping.controller=interaction
-edgeLabelCalculator.EdgeLabel.mapping.type=PassThroughMapping
-edgeLabelCalculator.EdgeLabel.visualPropertyType=EDGE_LABEL
-edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.mapping.controller=interaction
-edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
-edgeLabelCalculator.Solid-Edge\ Label-Passthrough\
Mapper.visualPropertyType=EDGE_LABEL
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.controller=interaction
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.controllerType=4
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.map.pd=LONG_DASH
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.map.pp=SOLID
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.mapping.type=DiscreteMapping
-edgeLineStyleCalculator.Sample1-Edge\ Line\ Style-Discrete\
Mapper.visualPropertyType=EDGE_LINE_STYLE
-globalAppearanceCalculator.Phylotree.defaultBackgroundColor=255,255,255
-globalAppearanceCalculator.Phylotree.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Phylotree.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.Phylotree.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Phylotree.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.Phylotree.defaultSloppySelectionColor=128,128,128
-globalAppearanceCalculator.Sample1.defaultBackgroundColor=255,255,255
-globalAppearanceCalculator.Sample1.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Sample1.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.Sample1.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Sample1.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.Sample1.defaultSloppySelectionColor=128,128,128
-globalAppearanceCalculator.Solid.defaultBackgroundColor=255,255,255
-globalAppearanceCalculator.Solid.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Solid.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.Solid.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Solid.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.Solid.defaultSloppySelectionColor=128,128,128
-globalAppearanceCalculator.Universe.defaultBackgroundColor=0,0,0
-globalAppearanceCalculator.Universe.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Universe.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.Universe.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.Universe.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.Universe.defaultSloppySelectionColor=128,128,128
-globalAppearanceCalculator.default.defaultBackgroundColor=204,204,255
-globalAppearanceCalculator.default.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.default.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.default.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.default.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.default.defaultSloppySelectionColor=128,128,128
-globalAppearanceCalculator.phylotree.defaultBackgroundColor=204,204,255
-globalAppearanceCalculator.phylotree.defaultEdgeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.phylotree.defaultEdgeSelectionColor=255,0,0
-globalAppearanceCalculator.phylotree.defaultNodeReverseSelectionColor=0,255,0
-globalAppearanceCalculator.phylotree.defaultNodeSelectionColor=255,255,0
-globalAppearanceCalculator.phylotree.defaultSloppySelectionColor=128,128,128
-nodeAppearanceCalculator.Phylotree.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.Phylotree.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.Phylotree.defaultEdgeLabel=
-nodeAppearanceCalculator.Phylotree.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Phylotree.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.Phylotree.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.Phylotree.defaultEdgeOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.Phylotree.defaultEdgeToolTip=
-nodeAppearanceCalculator.Phylotree.defaultNodeBorderColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultNodeBorderOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultNodeFillColor=255,255,255
-nodeAppearanceCalculator.Phylotree.defaultNodeFont=Default,plain,12
-nodeAppearanceCalculator.Phylotree.defaultNodeFontSize=12.0
-nodeAppearanceCalculator.Phylotree.defaultNodeHight=30.0
-nodeAppearanceCalculator.Phylotree.defaultNodeLabel="canonicalName"
-nodeAppearanceCalculator.Phylotree.defaultNodeLabelColor=0,0,0
-nodeAppearanceCalculator.Phylotree.defaultNodeLabelOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultNodeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Phylotree.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.Phylotree.defaultNodeLineWidth=1.0
-nodeAppearanceCalculator.Phylotree.defaultNodeOpacity=255
-nodeAppearanceCalculator.Phylotree.defaultNodeShape=rect
-nodeAppearanceCalculator.Phylotree.defaultNodeSize=20.0
-nodeAppearanceCalculator.Phylotree.defaultNodeToolTip=
-nodeAppearanceCalculator.Phylotree.defaultNodeWidth=70.0
-nodeAppearanceCalculator.Phylotree.nodeSizeLocked=true
-nodeAppearanceCalculator.Sample1.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.Sample1.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.Sample1.defaultEdgeLabel=
-nodeAppearanceCalculator.Sample1.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.Sample1.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Sample1.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.Sample1.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.Sample1.defaultEdgeOpacity=255
-nodeAppearanceCalculator.Sample1.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.Sample1.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.Sample1.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.Sample1.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.Sample1.defaultEdgeToolTip=
-nodeAppearanceCalculator.Sample1.defaultNodeBorderColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultNodeBorderOpacity=255
-nodeAppearanceCalculator.Sample1.defaultNodeFillColor=204,204,255
-nodeAppearanceCalculator.Sample1.defaultNodeFont=Dialog.bold,plain,12
-nodeAppearanceCalculator.Sample1.defaultNodeFontSize=12.0
-nodeAppearanceCalculator.Sample1.defaultNodeHight=30.0
-nodeAppearanceCalculator.Sample1.defaultNodeLabel=
-nodeAppearanceCalculator.Sample1.defaultNodeLabelColor=0,0,0
-nodeAppearanceCalculator.Sample1.defaultNodeLabelOpacity=255
-nodeAppearanceCalculator.Sample1.defaultNodeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Sample1.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.Sample1.defaultNodeLineWidth=0.0
-nodeAppearanceCalculator.Sample1.defaultNodeOpacity=255
-nodeAppearanceCalculator.Sample1.defaultNodeShape=ellipse
-nodeAppearanceCalculator.Sample1.defaultNodeSize=40.0
-nodeAppearanceCalculator.Sample1.defaultNodeToolTip=
-nodeAppearanceCalculator.Sample1.defaultNodeWidth=70.0
-nodeAppearanceCalculator.Sample1.nodeLabelCalculator=NodeLabel
-nodeAppearanceCalculator.Sample1.nodeSizeLocked=true
-nodeAppearanceCalculator.Solid.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.Solid.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.Solid.defaultEdgeLabel=
-nodeAppearanceCalculator.Solid.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.Solid.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Solid.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.Solid.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.Solid.defaultEdgeOpacity=255
-nodeAppearanceCalculator.Solid.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.Solid.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.Solid.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.Solid.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.Solid.defaultEdgeToolTip=
-nodeAppearanceCalculator.Solid.defaultNodeBorderColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultNodeBorderOpacity=255
-nodeAppearanceCalculator.Solid.defaultNodeFillColor=102,102,102
-nodeAppearanceCalculator.Solid.defaultNodeFont=Courier 10 Pitch Bold,plain,12
-nodeAppearanceCalculator.Solid.defaultNodeFontSize=18.0
-nodeAppearanceCalculator.Solid.defaultNodeHight=30.0
-nodeAppearanceCalculator.Solid.defaultNodeLabel=
-nodeAppearanceCalculator.Solid.defaultNodeLabelColor=0,0,0
-nodeAppearanceCalculator.Solid.defaultNodeLabelOpacity=160
-nodeAppearanceCalculator.Solid.defaultNodeLabelPosition=S,NW,c,0,5
-nodeAppearanceCalculator.Solid.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.Solid.defaultNodeLineWidth=0.0
-nodeAppearanceCalculator.Solid.defaultNodeOpacity=255
-nodeAppearanceCalculator.Solid.defaultNodeShape=ellipse
-nodeAppearanceCalculator.Solid.defaultNodeSize=40.0
-nodeAppearanceCalculator.Solid.defaultNodeToolTip=
-nodeAppearanceCalculator.Solid.defaultNodeWidth=70.0
-nodeAppearanceCalculator.Solid.nodeLabelCalculator=Solid-Node
Label-Passthrough Mapper
-nodeAppearanceCalculator.Solid.nodeSizeLocked=true
-nodeAppearanceCalculator.Universe.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.Universe.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.Universe.defaultEdgeLabel=
-nodeAppearanceCalculator.Universe.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.Universe.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Universe.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.Universe.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.Universe.defaultEdgeOpacity=255
-nodeAppearanceCalculator.Universe.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.Universe.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.Universe.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.Universe.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.Universe.defaultEdgeToolTip=
-nodeAppearanceCalculator.Universe.defaultNodeBorderColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultNodeBorderOpacity=255
-nodeAppearanceCalculator.Universe.defaultNodeFillColor=0,0,0
-nodeAppearanceCalculator.Universe.defaultNodeFont=Monospaced.bold,plain,12
-nodeAppearanceCalculator.Universe.defaultNodeFontSize=20.0
-nodeAppearanceCalculator.Universe.defaultNodeHight=30.0
-nodeAppearanceCalculator.Universe.defaultNodeLabel=
-nodeAppearanceCalculator.Universe.defaultNodeLabelColor=255,255,204
-nodeAppearanceCalculator.Universe.defaultNodeLabelOpacity=180
-nodeAppearanceCalculator.Universe.defaultNodeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.Universe.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.Universe.defaultNodeLineWidth=0.0
-nodeAppearanceCalculator.Universe.defaultNodeOpacity=0
-nodeAppearanceCalculator.Universe.defaultNodeShape=ellipse
-nodeAppearanceCalculator.Universe.defaultNodeSize=40.0
-nodeAppearanceCalculator.Universe.defaultNodeToolTip=
-nodeAppearanceCalculator.Universe.defaultNodeWidth=100.0
-nodeAppearanceCalculator.Universe.nodeLabelCalculator=Universe-Node
Label-Passthrough Mapper
-nodeAppearanceCalculator.Universe.nodeSizeLocked=true
-nodeAppearanceCalculator.default.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.default.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.default.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.default.defaultEdgeLabel=
-nodeAppearanceCalculator.default.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.default.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.default.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.default.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.default.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.default.defaultEdgeOpacity=255
-nodeAppearanceCalculator.default.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.default.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.default.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.default.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.default.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.default.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.default.defaultEdgeToolTip=
-nodeAppearanceCalculator.default.defaultNodeBorderColor=255,153,51
-nodeAppearanceCalculator.default.defaultNodeBorderOpacity=0.0
-nodeAppearanceCalculator.default.defaultNodeFillColor=255,153,51
-nodeAppearanceCalculator.default.defaultNodeFont=SansSerif.bold,plain,12
-nodeAppearanceCalculator.default.defaultNodeFontSize=12.0
-nodeAppearanceCalculator.default.defaultNodeHight=30.0
-nodeAppearanceCalculator.default.defaultNodeLabel=
-nodeAppearanceCalculator.default.defaultNodeLabelColor=0,0,0
-nodeAppearanceCalculator.default.defaultNodeLabelOpacity=255
-nodeAppearanceCalculator.default.defaultNodeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.default.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.default.defaultNodeLineWidth=1.5
-nodeAppearanceCalculator.default.defaultNodeOpacity=255
-nodeAppearanceCalculator.default.defaultNodeShape=roundrect
-nodeAppearanceCalculator.default.defaultNodeSize=40.0
-nodeAppearanceCalculator.default.defaultNodeToolTip=
-nodeAppearanceCalculator.default.defaultNodeWidth=70.0
-nodeAppearanceCalculator.default.nodeLabelCalculator=NodeLabel
-nodeAppearanceCalculator.default.nodeSizeLocked=true
-nodeAppearanceCalculator.phylotree.defaultEdgeColor=0,0,0
-nodeAppearanceCalculator.phylotree.defaultEdgeFont=SanSerif,plain,10
-nodeAppearanceCalculator.phylotree.defaultEdgeFontSize=10.0
-nodeAppearanceCalculator.phylotree.defaultEdgeLabel=
-nodeAppearanceCalculator.phylotree.defaultEdgeLabelColor=0,0,0
-nodeAppearanceCalculator.phylotree.defaultEdgeLabelOpacity=255
-nodeAppearanceCalculator.phylotree.defaultEdgeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.phylotree.defaultEdgeLineStyle=SOLID
-nodeAppearanceCalculator.phylotree.defaultEdgeLineWidth=1.0
-nodeAppearanceCalculator.phylotree.defaultEdgeOpacity=255
-nodeAppearanceCalculator.phylotree.defaultEdgeSourceArrowColor=0,0,0
-nodeAppearanceCalculator.phylotree.defaultEdgeSourceArrowOpacity=255
-nodeAppearanceCalculator.phylotree.defaultEdgeSourceArrowShape=NONE
-nodeAppearanceCalculator.phylotree.defaultEdgeTargetArrowColor=0,0,0
-nodeAppearanceCalculator.phylotree.defaultEdgeTargetArrowOpacity=255
-nodeAppearanceCalculator.phylotree.defaultEdgeTargetArrowShape=NONE
-nodeAppearanceCalculator.phylotree.defaultEdgeToolTip=
-nodeAppearanceCalculator.phylotree.defaultNodeBorderColor=255,153,51
-nodeAppearanceCalculator.phylotree.defaultNodeBorderOpacity=0.0
-nodeAppearanceCalculator.phylotree.defaultNodeFillColor=255,153,51
-nodeAppearanceCalculator.phylotree.defaultNodeFont=SansSerif.bold,plain,12
-nodeAppearanceCalculator.phylotree.defaultNodeFontSize=12.0
-nodeAppearanceCalculator.phylotree.defaultNodeHight=30.0
-nodeAppearanceCalculator.phylotree.defaultNodeLabel=
-nodeAppearanceCalculator.phylotree.defaultNodeLabelColor=0,0,0
-nodeAppearanceCalculator.phylotree.defaultNodeLabelOpacity=255
-nodeAppearanceCalculator.phylotree.defaultNodeLabelPosition=C,C,c,0,0
-nodeAppearanceCalculator.phylotree.defaultNodeLineStyle=SOLID
-nodeAppearanceCalculator.phylotree.defaultNodeLineWidth=1.5
-nodeAppearanceCalculator.phylotree.defaultNodeOpacity=255
-nodeAppearanceCalculator.phylotree.defaultNodeShape=roundrect
-nodeAppearanceCalculator.phylotree.defaultNodeSize=40.0
-nodeAppearanceCalculator.phylotree.defaultNodeToolTip=
-nodeAppearanceCalculator.phylotree.defaultNodeWidth=70.0
-nodeAppearanceCalculator.phylotree.nodeLabelCalculator=NodeLabel
-nodeAppearanceCalculator.phylotree.nodeSizeLocked=true
-nodeLabelCalculator.BasicPassThrough.mapping.controller=label
-nodeLabelCalculator.BasicPassThrough.mapping.type=PassThroughMapping
-nodeLabelCalculator.BasicPassThrough.visualPropertyType=NODE_LABEL
-nodeLabelCalculator.NodeLabel.mapping.controller=ID
-nodeLabelCalculator.NodeLabel.mapping.type=PassThroughMapping
-nodeLabelCalculator.NodeLabel.visualPropertyType=NODE_LABEL
-nodeLabelCalculator.Solid-Node\ Label-Passthrough\ Mapper.mapping.controller=ID
-nodeLabelCalculator.Solid-Node\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
-nodeLabelCalculator.Solid-Node\ Label-Passthrough\
Mapper.visualPropertyType=NODE_LABEL
-nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.mapping.controller=ID
-nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.mapping.type=PassThroughMapping
-nodeLabelCalculator.Universe-Node\ Label-Passthrough\
Mapper.visualPropertyType=NODE_LABEL
-nodeLabelCalculator.id\ as\ node\ labels.mapping.controller=ID
-nodeLabelCalculator.id\ as\ node\ labels.mapping.type=PassThroughMapping
-nodeLabelCalculator.id\ as\ node\ labels.visualPropertyType=NODE_LABEL
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.boundaryvalues=2
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv0.domainvalue=0.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv0.equal=10.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv0.greater=10.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv0.lesser=
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.bv1.domainvalue=0.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.equal=30.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.greater=
-nodeUniformSizeCalculator.Node\ Size-Continuous\ Mapper.mapping.bv1.lesser=30.0
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.controller=Degree
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.interpolator=LinearNumberToNumberInterpolator
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.mapping.type=ContinuousMapping
-nodeUniformSizeCalculator.Node\ Size-Continuous\
Mapper.visualPropertyType=NODE_SIZE
\ No newline at end of file
Modified:
csplugins/trunk/soc/chinmoy/phylotree/src/org/cytoscape/phylotree/actions/PhyloTreeImportAction.java
===================================================================
---
csplugins/trunk/soc/chinmoy/phylotree/src/org/cytoscape/phylotree/actions/PhyloTreeImportAction.java
2009-08-07 22:29:47 UTC (rev 17741)
+++
csplugins/trunk/soc/chinmoy/phylotree/src/org/cytoscape/phylotree/actions/PhyloTreeImportAction.java
2009-08-07 22:34:28 UTC (rev 17742)
@@ -212,7 +212,7 @@
CyLayouts.getLayout("slanted_cladogram").doLayout();
// Apply visual style
- Cytoscape.firePropertyChange(Cytoscape.VIZMAP_LOADED,
null, "phyloVizMap.props");
+ // Cytoscape.firePropertyChange(Cytoscape.VIZMAP_LOADED,
null, "phyloVizMap.props");
}
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