Author: kozo
Date: 2009-08-07 17:43:17 -0700 (Fri, 07 Aug 2009)
New Revision: 17745
Modified:
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/MultiLayerNetworkBuilderImpl.java
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/ui/LayerBuilderDialog.java
Log:
tried to set layer number attribute to all layer nodes, but there is
nullPointer error (refs ticket:21)
Modified:
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/MultiLayerNetworkBuilderImpl.java
===================================================================
---
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/MultiLayerNetworkBuilderImpl.java
2009-08-08 00:33:25 UTC (rev 17744)
+++
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/MultiLayerNetworkBuilderImpl.java
2009-08-08 00:43:17 UTC (rev 17745)
@@ -73,12 +73,14 @@
for (CyNode cyNode : topLayer.getNodeList()) {
String nodeName = cyNode.attrs().get(NODE_TITLE,
String.class);
-// String layerNumber = cyNode.attrs().get(LAYER_NUMBER,
String.class);
+ String layerNumber = cyNode.attrs().get(LAYER_NUMBER,
String.class);
+ System.out.println(layerNumber);
if (nodeMap.containsKey(nodeName) == false) {
CyNode newNode = layeredNetwork.addNode();
newNode.attrs().set(NODE_TITLE, nodeName);
-// newNode.attrs().set(LAYER_NUMBER, layerNumber);
+
newNode.attrs().getDataTable().createColumn(LAYER_NUMBER, String.class, false);
+ newNode.attrs().set(LAYER_NUMBER, layerNumber);
nodeMap.put(nodeName, newNode);
}
}
@@ -134,12 +136,14 @@
for (CyNode cyNode : bottomLayer.getNodeList()) {
String nodeName = cyNode.attrs().get(NODE_TITLE,
String.class);
-// String layerNumber = cyNode.attrs().get(LAYER_NUMBER,
String.class);
+ String layerNumber = cyNode.attrs().get(LAYER_NUMBER,
String.class);
+ System.out.println(layerNumber);
if (nodeMap.containsKey(nodeName) == false) {
CyNode newNode = layeredNetwork.addNode();
newNode.attrs().set(NODE_TITLE, nodeName);
-// newNode.attrs().set(LAYER_NUMBER, layerNumber);
+
newNode.attrs().getDataTable().createColumn(LAYER_NUMBER, String.class, false);
+ newNode.attrs().set(LAYER_NUMBER, layerNumber);
nodeMap.put(nodeName, newNode);
}
Modified:
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/ui/LayerBuilderDialog.java
===================================================================
---
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/ui/LayerBuilderDialog.java
2009-08-08 00:33:25 UTC (rev 17744)
+++
csplugins/trunk/soc/kozo/layer-plugin/layer-builder-plugin/src/main/java/org/cytoscape/layer/internal/ui/LayerBuilderDialog.java
2009-08-08 00:43:17 UTC (rev 17745)
@@ -29,6 +29,8 @@
import org.cytoscape.model.CyNode;
import org.cytoscape.session.CyNetworkManager;
+import static org.cytoscape.model.GraphObject.NODE;
+
/**
*
* @author kozo
@@ -574,20 +576,22 @@
for (CyNode cyNode : cyNetwork.getNodeList()) {
- System.out.println(Integer.toString(i));
+
cyNode.attrs().getDataTable().createColumn(LAYER_NUMBER, String.class, false);
cyNode.attrs().set(LAYER_NUMBER,
Integer.toString(i));
-
System.out.println(cyNode.attrs().get(LAYER_NUMBER, String.class));
-
+//
System.out.println(cyNode.attrs().get(LAYER_NUMBER, String.class));
+// System.out.println("OK!");
}
layers.add(cyNetwork);
+// System.out.println("attribute append finished!");
+
}
for (int i = 0; i < layerConnectionTableModel.getRowCount();
i++) {
connectors.add(manager.getNetwork(layerConnectionTableModel
.getValueAt(i, CONNECTOR)));
-
System.out.println(layerConnectionTableModel.getValueAt(i,
- CONNECTOR));
+//
System.out.println(layerConnectionTableModel.getValueAt(i,
+// CONNECTOR));
}
// Setup
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