Author: kozo Date: 2009-08-12 11:26:59 -0700 (Wed, 12 Aug 2009) New Revision: 17794
Modified: csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif Log: removed TF nodes only appearing in connector (refs ticket:22) (refs ticket:24) Modified: csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif =================================================================== --- csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif 2009-08-12 17:28:37 UTC (rev 17793) +++ csplugins/trunk/soc/kozo/sample-data/regulator_gene_connector.sif 2009-08-12 18:26:59 UTC (rev 17794) @@ -4,17 +4,11 @@ CodY(TF) tfg leuD TnrA(TF) tfg leuC TnrA(TF) tfg leuD -TrnS-Leu2(TF) tfg leuC -TrnS-Leu2(TF) tfg leuD CcpA(TF) tfg leuB CodY(TF) tfg leuB TnrA(TF) tfg leuB -TrnS-Leu2(TF) tfg leuB GabR(TF) tfg gabT -BirA(TF) tfg bioW CcpA(TF) tfg licH -LicR(TF) tfg licH -BirA(TF) tfg bioF CcpA(TF) tfg ackA CcpA(TF) tfg ilvB CcpA(TF) tfg ilvH @@ -22,8 +16,6 @@ CodY(TF) tfg ilvH TnrA(TF) tfg ilvB TnrA(TF) tfg ilvH -TrnS-Leu2(TF) tfg ilvB -TrnS-Leu2(TF) tfg ilvH Spo0A(TF) tfg accA Spo0A(TF) tfg accD CcpA(TF) tfg mmgA @@ -31,23 +23,14 @@ CodY(TF) tfg acsA CcpA(TF) tfg mmgC YsiA(TF) tfg acdA -BirA(TF) tfg bioA PurR(TF) tfg purB PurR(TF) tfg purA PhoP(TF) tfg phoA PhoP(TF) tfg phoB PhoP(TF) tfg phoB -TenA(TF) tfg phoA PucR(TF) tfg pucH CcpA(TF) tfg uxaA ExuR(TF) tfg uxaA -MtrB(TF) tfg trpD -Rho(TF) tfg trpD -MtrB(TF) tfg trpE -Rho(TF) tfg trpE -MtrB(TF) tfg pabB -MtrB(TF) tfg pabA -AhrC(TF) tfg rocF RocR(TF) tfg rocF Spo0A(TF) tfg rocF AbrB(TF) tfg asnH @@ -56,13 +39,8 @@ PyrR(TF) tfg pyrB CcpA(TF) tfg bglH LicT(TF) tfg bglH -YlpC(TF) tfg fabF -YlpC(TF) tfg fabHA -YlpC(TF) tfg fabHB AbrB(TF) tfg carA AbrB(TF) tfg carB -AhrC(TF) tfg carA -AhrC(TF) tfg carB PurR(TF) tfg pyrAA PurR(TF) tfg pyrAB PyrR(TF) tfg pyrAA @@ -70,7 +48,6 @@ CcpA(TF) tfg citZ CcpA(TF) tfg mmgD CcpC(TF) tfg citZ -CitR(TF) tfg citA ArfM(TF) tfg hemN ArfM(TF) tfg hemZ Fnr(TF) tfg hemZ @@ -80,12 +57,9 @@ Spo0A(TF) tfg cdd CcpA(TF) tfg dra DeoR(TF) tfg dra -BirA(TF) tfg bioD SpoVT(TF) tfg lysA -MtrB(TF) tfg folB PurR(TF) tfg pyrC PyrR(TF) tfg pyrC -MtrB(TF) tfg sul CodY(TF) tfg ilvD CcpA(TF) tfg uxuA ExuR(TF) tfg uxuA @@ -101,7 +75,6 @@ TnrA(TF) tfg gltA TnrA(TF) tfg gltB CggR(TF) tfg gapA -YqzB(TF) tfg gapB CcpA(TF) tfg eutD SpoVT(TF) tfg gdh CcpA(TF) tfg uxaC @@ -114,7 +87,6 @@ TnrA(TF) tfg glnA PerR(TF) tfg hemA CcpA(TF) tfg glpK -GlpP(TF) tfg glpK TenI(TF) tfg goxB PurR(TF) tfg guaC PucR(TF) tfg guaD @@ -122,8 +94,6 @@ CcpA(TF) tfg hutH CodY(TF) tfg hutH HutP(TF) tfg hutH -MtrB(TF) tfg trpC -Rho(TF) tfg trpC Fur(TF) tfg dhbB Fur(TF) tfg dhbC CcpA(TF) tfg icd @@ -131,7 +101,6 @@ CcpA(TF) tfg ilvC CodY(TF) tfg ilvC TnrA(TF) tfg ilvC -TrnS-Leu2(TF) tfg ilvC AraR(TF) tfg araA CcpA(TF) tfg araA AnsR(TF) tfg ansA @@ -147,19 +116,15 @@ CcpA(TF) tfg mmsA IolR(TF) tfg mmsA YrzC(TF) tfg mtn -AhrC(TF) tfg rocD RocR(TF) tfg rocD Spo0A(TF) tfg rocD AbrB(TF) tfg argF -AhrC(TF) tfg argF PurR(TF) tfg pyrE PyrR(TF) tfg pyrE PurR(TF) tfg pyrF PyrR(TF) tfg pyrF -BkdR(TF) tfg ptb CodY(TF) tfg ptb TnrA(TF) tfg ptb -YqzB(TF) tfg pckA CggR(TF) tfg pgk CggR(TF) tfg pgm PurR(TF) tfg purE @@ -168,11 +133,7 @@ PurR(TF) tfg purD PurR(TF) tfg purN PurR(TF) tfg purM -MtrB(TF) tfg tyrA -Rho(TF) tfg tyrA -AhrC(TF) tfg rocA RocR(TF) tfg rocA -YofA(TF) tfg pycA AbrB(TF) tfg rbsK CcpA(TF) tfg rbsK ResD(TF) tfg nrdE @@ -185,12 +146,6 @@ ExuR(TF) tfg uxaB Spo0A(TF) tfg tkt CggR(TF) tfg tpiA -MtrB(TF) tfg trpA -MtrB(TF) tfg trpB -Rho(TF) tfg trpA -Rho(TF) tfg trpB -MtrB(TF) tfg hisC -Rho(TF) tfg hisC CodY(TF) tfg ureA CodY(TF) tfg ureB CodY(TF) tfg ureC @@ -223,30 +178,20 @@ PurR(TF) tfg xpt CcpA(TF) tfg xylA CcpB(TF) tfg xylA -XylR(TF) tfg xylA CcpA(TF) tfg xylB CcpB(TF) tfg xylB -XylR(TF) tfg xylB CcpA(TF) tfg acuA CcpA(TF) tfg acuB CcpA(TF) tfg acuC -AcoR(TF) tfg acoA -AcoR(TF) tfg acoB CcpA(TF) tfg acoA CcpA(TF) tfg acoB -AcoR(TF) tfg acoL CcpA(TF) tfg acoL -AcoR(TF) tfg acoC CcpA(TF) tfg acoC -TrnD-Cys(TF) tfg cysE AraR(TF) tfg abfA AraR(TF) tfg xsa CcpA(TF) tfg abfA AbrB(TF) tfg argJ -AhrC(TF) tfg argJ -BltR(TF) tfg bltD Mta(TF) tfg bltD -GlpP(TF) tfg glpQ PhoP(TF) tfg glpQ ArfM(TF) tfg nasD ArfM(TF) tfg nasE @@ -272,16 +217,12 @@ YrzC(TF) tfg yrhB YsiA(TF) tfg yusK YvbA(TF) tfg yusK -BkdR(TF) tfg lpdV CodY(TF) tfg lpdV TnrA(TF) tfg lpdV -BkdR(TF) tfg bkdAA -BkdR(TF) tfg bkdAB CodY(TF) tfg bkdAA CodY(TF) tfg bkdAB TnrA(TF) tfg bkdAA TnrA(TF) tfg bkdAB -BkdR(TF) tfg bkdB CodY(TF) tfg bkdB TnrA(TF) tfg bkdB CcpA(TF) tfg lcfA @@ -320,27 +261,15 @@ YwfK(TF) tfg yvgQ YwfK(TF) tfg yvgR CcpA(TF) tfg ydhR -GmuR(TF) tfg ydhR -YcbA(TF) tfg ybgJ CcpA(TF) tfg acoR -DegU(TF) tfg ispA -Hpr(TF) tfg ispA -Ipi(TF) tfg ispA -AlsR(TF) tfg alsS ArfM(TF) tfg alsS CcpA(TF) tfg alsS -YdiH(TF) tfg alsS CcpA(TF) tfg ydhP -GmuR(TF) tfg ydhP PerR(TF) tfg hemB PerR(TF) tfg hemC -BkdR(TF) tfg bcd CodY(TF) tfg bcd TnrA(TF) tfg bcd -YqzB(TF) tfg speD -YufM(TF) tfg ywkA CodY(TF) tfg ilvA -Spo1A(TF) tfg ycgN CcpA(TF) tfg yjmC ExuR(TF) tfg yjmC CcpA(TF) tfg kdgA @@ -350,47 +279,33 @@ TnrA(TF) tfg ywrD IolR(TF) tfg iolS CcpA(TF) tfg ydhS -GmuR(TF) tfg ydhS DegU(TF) tfg sacX SacT(TF) tfg sacX SacY(TF) tfg sacX CcpA(TF) tfg malA -YfiA(TF) tfg malA CcpA(TF) tfg treA TreR(TF) tfg treA -GlpP(TF) tfg glpD -GutR(TF) tfg gutB YrzC(TF) tfg yrhA -LrpA(TF) tfg glyA -LrpB(TF) tfg glyA PurR(TF) tfg glyA PyrR(TF) tfg pyrR TnrA(TF) tfg ywlF -BirA(TF) tfg bioB CodY(TF) tfg ybgE -LacR(TF) tfg lacA CcpA(TF) tfg idh IolR(TF) tfg idh CcpA(TF) tfg leuA CodY(TF) tfg leuA TnrA(TF) tfg leuA -TrnS-Leu2(TF) tfg leuA AbrB(TF) tfg citB CcpC(TF) tfg citB CodY(TF) tfg citB TnrA(TF) tfg citB CcpA(TF) tfg ydhT -GmuR(TF) tfg ydhT CcpA(TF) tfg yxjF -RsfA(TF) tfg fabL SpoVT(TF) tfg fabL -YfhP(TF) tfg fabL -YlpC(TF) tfg fabI YjbD(TF) tfg ytnL YrzC(TF) tfg ytnL YtlI(TF) tfg ytnL CcpA(TF) tfg xynB -XylR(TF) tfg xynB Fur(TF) tfg dhbA CcpA(TF) tfg gntZ CcpB(TF) tfg gntZ @@ -398,8 +313,6 @@ CcpA(TF) tfg kdgK KdgR(TF) tfg kdgK PhoP(TF) tfg yfkN -YlpC(TF) tfg fabD -BkdR(TF) tfg buk CodY(TF) tfg buk TnrA(TF) tfg buk CcpA(TF) tfg gntK @@ -409,7 +322,6 @@ DegU(TF) tfg amyE TenI(TF) tfg tenA AbrB(TF) tfg argD -AhrC(TF) tfg argD AbrB(TF) tfg hutG CcpA(TF) tfg hutG CodY(TF) tfg hutG @@ -418,32 +330,16 @@ CcpA(TF) tfg hutI CodY(TF) tfg hutI HutP(TF) tfg hutI -ComA(TF) tfg pel TnrA(TF) tfg pel -MtrB(TF) tfg aroE -Rho(TF) tfg aroE PucR(TF) tfg yurH CcpA(TF) tfg yjmD ExuR(TF) tfg yjmD AbrB(TF) tfg argB -AhrC(TF) tfg argB -YlpC(TF) tfg fabG -AlsR(TF) tfg alsD ArfM(TF) tfg alsD CcpA(TF) tfg alsD -YdiH(TF) tfg alsD YrxA(TF) tfg nadC AbrB(TF) tfg argC -AhrC(TF) tfg argC -MtrB(TF) tfg folK -MtrB(TF) tfg trpF -Rho(TF) tfg trpF DegU(TF) tfg sacB SacT(TF) tfg sacB SacY(TF) tfg sacB -TenA(TF) tfg sacB -BirA(TF) tfg bioI -HxlR(TF) tfg hxlA -HxlR(TF) tfg hxlB -MtrB(TF) tfg pabC YrxA(TF) tfg nifS --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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