Author: pwang
Date: 2010-06-01 15:54:32 -0700 (Tue, 01 Jun 2010)
New Revision: 20392
Modified:
cytoscape/trunk/src/cytoscape/dialogs/plugins/PluginManageDialog.java
Log:
Add Lucene-based searching
Modified: cytoscape/trunk/src/cytoscape/dialogs/plugins/PluginManageDialog.java
===================================================================
--- cytoscape/trunk/src/cytoscape/dialogs/plugins/PluginManageDialog.java
2010-06-01 22:53:49 UTC (rev 20391)
+++ cytoscape/trunk/src/cytoscape/dialogs/plugins/PluginManageDialog.java
2010-06-01 22:54:32 UTC (rev 20392)
@@ -36,9 +36,18 @@
package cytoscape.dialogs.plugins;
import cytoscape.Cytoscape;
+import cytoscape.CytoscapeVersion;
+import cytoscape.bookmarks.Bookmarks;
+import cytoscape.bookmarks.DataSource;
+import cytoscape.dialogs.preferences.BookmarkDialog;
+import cytoscape.dialogs.preferences.EditBookmarkDialog;
import cytoscape.logger.CyLogger;
import cytoscape.plugin.DownloadableInfo;
+import cytoscape.plugin.ManagerUtil;
+import cytoscape.plugin.PluginInquireAction;
+import cytoscape.plugin.PluginManagerInquireTask;
+import cytoscape.plugin.PluginStatus;
import cytoscape.plugin.ThemeInfo;
import cytoscape.plugin.PluginInfo;
import cytoscape.plugin.PluginManager;
@@ -48,25 +57,48 @@
import cytoscape.task.TaskMonitor;
import cytoscape.task.ui.JTaskConfig;
import cytoscape.task.util.TaskManager;
+import cytoscape.util.BookmarksUtil;
import cytoscape.util.OpenBrowser;
+import java.awt.Component;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.ItemEvent;
import java.util.List;
-
+import java.util.Map;
+import java.util.Vector;
import javax.swing.*;
import javax.swing.event.TreeSelectionEvent;
import javax.swing.event.TreeSelectionListener;
import javax.swing.tree.TreePath;
+import java.util.ArrayList;
+import java.awt.event.ItemEvent;
+import java.awt.event.ItemListener;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
+import java.awt.Color;
+import javax.swing.event.ListSelectionEvent;
+import javax.swing.event.ListSelectionListener;
+import java.awt.Dimension;
public class PluginManageDialog extends javax.swing.JDialog implements
TreeSelectionListener, ActionListener {
private static CyLogger logger =
CyLogger.getLogger(PluginManageDialog.class);
+ public static String CURRENTLY_INSTALLED = "Currently Installed";
+ public static String AVAILABLE_FOR_INSTALL = "Available for Install";
+
+ public static String defaultPluginSiteUrl =
cytoscape.CytoscapeInit.getProperties().getProperty("defaultPluginDownloadUrl");
+ public static String DefaultPluginSiteTitle = "Cytoscape";
+
+ //private boolean hasPluginSiteURLChanged = false;
+ private String currentPluginSiteURL = defaultPluginSiteUrl;
+
+ private String HOWTOSEARCH = "You can use wildcard * or ? in your
search words";
+
public enum PluginInstallStatus {
- INSTALLED("Currently Installed"), AVAILABLE("Available for
Install");
+ INSTALLED(CURRENTLY_INSTALLED),
AVAILABLE(AVAILABLE_FOR_INSTALL);
private String typeText;
private PluginInstallStatus(String type) {
@@ -116,8 +148,124 @@
initComponents();
initTree();
this.setSize(600, 500);
+ this.btnSearch.setEnabled(false);
+ this.availablePluginsLabel.setVisible(false);
+ this.downloadLocText.setVisible(false);
+ //this.sitePanel2.setVisible(false);
+ //this.changeSiteButton.setVisible(false);
+ this.btnClear.setEnabled(false);
+
+ bookmarksSetUp();
+
+ this.lstDownloadSites.setCellRenderer(new
BookmarkCellRenderer());
+ this.lstDownloadSites.addListSelectionListener(new
MyListSelectionListener());
+
this.lstDownloadSites.getSelectionModel().setSelectionMode(javax.swing.ListSelectionModel.SINGLE_SELECTION);
+ loadBookmarkCMBox(true);
+
+
//this.lbSiteURL.setText(((DataSource)this.cmbDownloadSites.getSelectedItem()).getHref());
+ //this.jTabbedPane1.setSelectedIndex(1);
+
+ this.jTabbedPane1.addChangeListener(new MyChangeListener());
+ this.tfSearch.setToolTipText(HOWTOSEARCH);
}
+ class MyChangeListener implements ChangeListener {
+ public void stateChanged(ChangeEvent e){
+ int width =
PluginManageDialog.this.jTabbedPane1.getSize().width;
+
+ if
(PluginManageDialog.this.jTabbedPane1.getSelectedIndex() == 0){
+
+
//PluginManageDialog.this.jTabbedPane1.setMinimumSize(new Dimension(width, 50));
+
//PluginManageDialog.this.jTabbedPane1.setPreferredSize(new Dimension(width,
50));
+
//PluginManageDialog.this.pnlSearch.setPreferredSize(new Dimension(width, 50));
+
//PluginManageDialog.this.pnlSettings.setPreferredSize(new Dimension(width,
50));
+ }
+ else {
+
//PluginManageDialog.this.jTabbedPane1.setMinimumSize(new Dimension(width,
150));
+
//PluginManageDialog.this.jTabbedPane1.setPreferredSize(new Dimension(width,
150));
+
//PluginManageDialog.this.pnlSearch.setPreferredSize(new Dimension(width, 150));
+
//PluginManageDialog.this.pnlSettings.setPreferredSize(new Dimension(width,
150));
+
+ }
+ //PluginManageDialog.this.pack();
+ }
+ }
+
+ // Refresh the plugin-tree after the change of Plugin site URL
+ private void refreshPluginTree(){
+ switchDownloadSites();
+ cytoscape.task.Task task = new PluginManagerInquireTask
+ (this.currentPluginSiteURL, new UrlAction(this,
this.currentPluginSiteURL));
+ // Configure JTask Dialog Pop-Up Box
+ JTaskConfig jTaskConfig = new JTaskConfig();
+ jTaskConfig.setOwner(Cytoscape.getDesktop());
+ jTaskConfig.displayCloseButton(false);
+ jTaskConfig.displayStatus(true);
+ jTaskConfig.setAutoDispose(true);
+ jTaskConfig.displayCancelButton(true);
+ // Execute Task in New Thread; pop open JTask Dialog Box.
+ TaskManager.executeTask(task, jTaskConfig);
+ }
+
+
+ private class UrlAction extends PluginInquireAction {
+
+ private PluginManageDialog dialog;
+ private String url;
+
+ public UrlAction(PluginManageDialog Dialog, String Url) {
+ dialog = Dialog;
+ url = Url;
+ }
+
+ public boolean displayProgressBar() {
+ return true;
+ }
+
+ public String getProgressBarMessage() {
+ return "Attempting to connect...";
+ }
+
+ public void inquireAction(List<DownloadableInfo> Results) {
+
+ if (isExceptionThrown()) {
+ if (getIOException() != null) {
+ // failed to read the given url
+
logger.warn(PluginManageDialog.CommonError.NOXML + url, getIOException());
+
dialog.setError(PluginManageDialog.CommonError.NOXML + url);
+ } else if (getJDOMException() != null) {
+ // failed to parse the xml file at the
url
+
logger.warn(PluginManageDialog.CommonError.BADXML + url, getJDOMException());
+
dialog.setError(PluginManageDialog.CommonError.BADXML + url);
+ }
+ } else {
+
+ PluginManager Mgr =
PluginManager.getPluginManager();
+ List<DownloadableInfo> UniqueAvailable =
ManagerUtil.getUnique(Mgr
+
.getDownloadables(PluginStatus.CURRENT), Results);
+
+ Map<String, List<DownloadableInfo>> NewPlugins
= ManagerUtil
+
.sortByCategory(UniqueAvailable);
+
+ if (NewPlugins.size() <= 0) {
+ dialog.setError("No plugins compatible
with "
+ + new
CytoscapeVersion().getFullVersion()
+ + " available from this
site.");
+ } else {
+ dialog.setMessage("");
+ }
+
+ for (String Category : NewPlugins.keySet()) {
+ dialog.addCategory(Category,
NewPlugins.get(Category),
+
PluginManageDialog.PluginInstallStatus.AVAILABLE);
+ }
+ }
+
+ }
+
+ }
+
+
// trying to listen to events in the Url dialog
public void actionPerformed(ActionEvent evt) {
logger.info("URL DIALOG: " + evt.getSource().toString());
@@ -147,8 +295,7 @@
}
});
-
- if (Node.isNodeAncestor(installedNode)) {
+ if
(Node.getParent().getParent().getTitle().equalsIgnoreCase(CURRENTLY_INSTALLED))
{
installDeleteButton.setText("Delete");
if (PluginManager.usingWebstartManager()) {
installDeleteButton.setEnabled(false);
@@ -156,7 +303,8 @@
} else {
installDeleteButton.setEnabled(true);
}
- } else if (Node.isNodeAncestor(availableNode)) {
+ } else if
(Node.getParent().getParent().getTitle().equalsIgnoreCase(AVAILABLE_FOR_INSTALL))
{
+
installDeleteButton.setText("Install");
installDeleteButton.setEnabled(true);
}
@@ -272,14 +420,7 @@
treeModel.addNodeToParent(node, Category);
}
- // change site url
- private void changeSiteButtonActionPerformed(java.awt.event.ActionEvent
evt) {
- PluginUrlDialog dialog = new PluginUrlDialog(this);
- dialog.setVisible(true);
- }
-
-
// allow for outdated versions
private void versionCheckItemStateChanged(java.awt.event.ItemEvent evt)
{
TreePath[] SelectedPaths = pluginTree.getSelectionPaths();
@@ -450,7 +591,119 @@
hiddenNodes = new java.util.HashMap<TreeNode,
java.util.List<TreeNode>>();
}
+
+
+ private Vector getAllPluginVector(){
+
+ Vector<Vector> allPluginVect = new Vector<Vector>();
+
+ TreeNode root = (TreeNode) this.treeModel.getRoot();
+ for (int i=0; i< root.getChildCount(); i++){
+ TreeNode n = root.getChildAt(i);
+ Vector<TreeNode> categories = n.getChildren();
+ for (int j=0; j<categories.size(); j++){
+ TreeNode category = categories.elementAt(j);
+ for (int k=0; k<category.getChildCount(); k++){
+ TreeNode leaf = category.getChildAt(k);
+ Vector aPluginVect = new Vector();
+ aPluginVect.add(n.getTitle());
+ aPluginVect.add(category.getTitle());
+ aPluginVect.add(leaf.getObject());
+ allPluginVect.add(aPluginVect);
+ }
+ }
+ }
+
+ return allPluginVect;
+ }
+
+
+ // Update tree model based on the search result
+ private void updateTreeModel(Vector filteredPluginVector) {
+
+ TreeNode newRootTreeNode = new TreeNode("Plugins", true);
+ ManagerModel newTreeModel = new ManagerModel(newRootTreeNode);
+
+ TreeNode newInstalledNode = new
TreeNode(PluginInstallStatus.INSTALLED.toString());
+ TreeNode newAvailableNode = new
TreeNode(PluginInstallStatus.AVAILABLE.toString());
+ //
+ newTreeModel.addNodeToParent(newRootTreeNode, newInstalledNode);
+ newTreeModel.addNodeToParent(newRootTreeNode, newAvailableNode);
+
+ if (filteredPluginVector != null){
+ // Add the filtered plugins to the new Tree Model
+ for (int i=0; i < filteredPluginVector.size(); i++ ){
+
+ Vector aPlugin = (Vector)
filteredPluginVector.elementAt(i);
+
+ if
(aPlugin.elementAt(0).toString().equalsIgnoreCase(CURRENTLY_INSTALLED)){
+ //add to branch of newInstalledNode
+ String category =
aPlugin.elementAt(1).toString();
+ TreeNode leafNode = new
TreeNode((DownloadableInfo) aPlugin.elementAt(2));
+ // get the category TreeNode
+ TreeNode categoryNode = null;
+ for (int j=0;
j<newInstalledNode.getChildCount();j++ ){
+ TreeNode node =
newInstalledNode.getChildAt(j);
+ if
(node.getTitle().equalsIgnoreCase(category)){
+ categoryNode = node;
+
newTreeModel.addNodeToParent(categoryNode, leafNode);
+ break;
+ }
+ }
+ if (categoryNode == null){
+ categoryNode = new TreeNode(category,
true);
+
newTreeModel.addNodeToParent(categoryNode, leafNode);
+
newTreeModel.addNodeToParent(newInstalledNode,categoryNode);
+ }
+ }
+ else if
(aPlugin.elementAt(0).toString().equalsIgnoreCase(AVAILABLE_FOR_INSTALL)){
+ //add to the branch of newAvailableNode
+ String category =
aPlugin.elementAt(1).toString();
+ TreeNode leafNode = new
TreeNode((DownloadableInfo) aPlugin.elementAt(2));
+ // get the category TreeNode
+ TreeNode categoryNode = null;
+ for (int j=0;
j<newAvailableNode.getChildCount();j++ ){
+ TreeNode node =
newAvailableNode.getChildAt(j);
+ if
(node.getTitle().equalsIgnoreCase(category)){
+ categoryNode = node;
+
newTreeModel.addNodeToParent(categoryNode, leafNode);
+ break;
+ }
+ }
+ if (categoryNode == null){
+ categoryNode = new TreeNode(category,
true);
+
newTreeModel.addNodeToParent(categoryNode, leafNode);
+
newTreeModel.addNodeToParent(newAvailableNode,categoryNode);
+ }
+ }
+ }
+ }
+
+ pluginTree.setModel(newTreeModel);
+
+ pluginTree.expandPath( new TreePath(newAvailableNode.getPath())
);
+ pluginTree.expandPath( new TreePath(newInstalledNode.getPath())
);
+ }
+
+ private void switchToMainDialog() {
+ // switch to the main treeModel
+ pluginTree.setModel(treeModel);
+ TreeNode root = (TreeNode) treeModel.getRoot();
+
+ // Expand the tree to level 1
+ Vector<TreeNode> treeNodeVect = root.getChildren();
+ for (int i=0; i< treeNodeVect.size(); i++){
+ TreeNode n = treeNodeVect.elementAt(i);
+ pluginTree.expandPath(new
TreePath(treeModel.getPathToRoot(n)));
+ }
+
+ // switch the sitePanel
+ this.sitePanel.setVisible(true);
+ //this.sitePanel2.setVisible(false);
+ }
+
+
/** This method is called from within the constructor to
* initialize the form.
* WARNING: Do NOT modify this code. The content of this method is
@@ -460,20 +713,35 @@
private void initComponents() {
java.awt.GridBagConstraints gridBagConstraints;
+ jSplitPane2 = new javax.swing.JSplitPane();
+ jTabbedPane1 = new javax.swing.JTabbedPane();
+ pnlSearch = new javax.swing.JPanel();
topPane = new javax.swing.JPanel();
+ sitePanel = new javax.swing.JPanel();
+ tfSearch = new javax.swing.JTextField();
+ btnSearch = new javax.swing.JButton();
+ btnClear = new javax.swing.JButton();
+ downloadLocText = new javax.swing.JLabel();
+ lbSearchTitle = new javax.swing.JLabel();
+ pnlSettings = new javax.swing.JPanel();
+ jLabel3 = new javax.swing.JLabel();
+ jPanel2 = new javax.swing.JPanel();
+ btnAddSite = new javax.swing.JButton();
+ btnEditSite = new javax.swing.JButton();
+ btnDeleteSite = new javax.swing.JButton();
+ jScrollPane1 = new javax.swing.JScrollPane();
+ lstDownloadSites = new javax.swing.JList();
+ jPanel3 = new javax.swing.JPanel();
availablePluginsLabel = new javax.swing.JLabel();
- downloadLocText = new javax.swing.JTextArea();
- sitePanel = new javax.swing.JPanel();
- changeSiteButton = new javax.swing.JButton();
versionCheck = new javax.swing.JCheckBox();
jSplitPane1 = new javax.swing.JSplitPane();
treeScrollPane = new javax.swing.JScrollPane();
pluginTree = new javax.swing.JTree();
infoScrollPane = new javax.swing.JScrollPane();
infoTextPane = new javax.swing.JEditorPane();
- bottomPane = new javax.swing.JPanel();
msgLabel = new javax.swing.JLabel();
msgPanel = new javax.swing.JTextArea();
+ bottomPane = new javax.swing.JPanel();
buttonPanel = new javax.swing.JPanel();
installDeleteButton = new javax.swing.JButton();
closeButton = new javax.swing.JButton();
@@ -481,49 +749,173 @@
getContentPane().setLayout(new java.awt.GridBagLayout());
setDefaultCloseOperation(javax.swing.WindowConstants.DISPOSE_ON_CLOSE);
+ jSplitPane2.setOrientation(javax.swing.JSplitPane.VERTICAL_SPLIT);
+ pnlSearch.setLayout(new java.awt.GridBagLayout());
+
topPane.setLayout(new java.awt.GridBagLayout());
- availablePluginsLabel.setText("Plugins available for download from:");
- availablePluginsLabel.setEnabled(false);
- availablePluginsLabel.setFocusable(false);
- availablePluginsLabel.setInheritsPopupMenu(false);
+ sitePanel.setLayout(new java.awt.GridBagLayout());
+
+ tfSearch.addActionListener(new java.awt.event.ActionListener() {
+ public void actionPerformed(java.awt.event.ActionEvent evt) {
+ tfSearchActionPerformed(evt);
+ }
+ });
+ tfSearch.addKeyListener(new java.awt.event.KeyAdapter() {
+ public void keyTyped(java.awt.event.KeyEvent evt) {
+ tfSearchKeyTyped(evt);
+ }
+ });
+
gridBagConstraints = new java.awt.GridBagConstraints();
- gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
- gridBagConstraints.insets = new java.awt.Insets(10, 10, 5, 0);
- topPane.add(availablePluginsLabel, gridBagConstraints);
+ gridBagConstraints.gridy = 3;
+ gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
+ gridBagConstraints.weightx = 1.0;
+ sitePanel.add(tfSearch, gridBagConstraints);
- downloadLocText.setBackground(new java.awt.Color(230, 230, 230));
- downloadLocText.setColumns(20);
- downloadLocText.setEditable(false);
- downloadLocText.setLineWrap(true);
- downloadLocText.setRows(5);
- downloadLocText.setWrapStyleWord(true);
- downloadLocText.setFocusable(false);
- downloadLocText.setMinimumSize(new java.awt.Dimension(102, 50));
- downloadLocText.setPreferredSize(new java.awt.Dimension(100, 60));
+ btnSearch.setText("Search");
+ btnSearch.addActionListener(new java.awt.event.ActionListener() {
+ public void actionPerformed(java.awt.event.ActionEvent evt) {
+ btnSearchActionPerformed(evt);
+ }
+ });
+
gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 1;
+ gridBagConstraints.gridy = 3;
+ gridBagConstraints.insets = new java.awt.Insets(5, 10, 5, 10);
+ sitePanel.add(btnSearch, gridBagConstraints);
+
+ btnClear.setText("Clear");
+ btnClear.setPreferredSize(new java.awt.Dimension(67, 23));
+ btnClear.addActionListener(new java.awt.event.ActionListener() {
+ public void actionPerformed(java.awt.event.ActionEvent evt) {
+ btnClearActionPerformed(evt);
+ }
+ });
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 2;
+ gridBagConstraints.gridy = 3;
+ gridBagConstraints.insets = new java.awt.Insets(0, 0, 0, 10);
+ sitePanel.add(btnClear, gridBagConstraints);
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridy = 1;
- gridBagConstraints.gridheight = 3;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
+ gridBagConstraints.weightx = 0.2;
+ gridBagConstraints.insets = new java.awt.Insets(10, 10, 10, 0);
+ topPane.add(sitePanel, gridBagConstraints);
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
+ gridBagConstraints.gridy = 1;
+ gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
+ gridBagConstraints.anchor = java.awt.GridBagConstraints.EAST;
gridBagConstraints.weightx = 1.0;
- gridBagConstraints.weighty = 1.0;
- gridBagConstraints.insets = new java.awt.Insets(0, 10, 0, 30);
- topPane.add(downloadLocText, gridBagConstraints);
+ gridBagConstraints.insets = new java.awt.Insets(0, 0, 10, 0);
+ pnlSearch.add(topPane, gridBagConstraints);
- sitePanel.setLayout(new java.awt.GridBagLayout());
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
+ gridBagConstraints.gridy = 2;
+ pnlSearch.add(downloadLocText, gridBagConstraints);
- changeSiteButton.setText("Change Download Site");
- changeSiteButton.addActionListener(new java.awt.event.ActionListener()
{
+ lbSearchTitle.setText("Enter key words to search");
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
+ gridBagConstraints.insets = new java.awt.Insets(0, 10, 0, 0);
+ pnlSearch.add(lbSearchTitle, gridBagConstraints);
+
+ jTabbedPane1.addTab("Search", pnlSearch);
+
+ pnlSettings.setLayout(new java.awt.GridBagLayout());
+
+ jLabel3.setText("Download sites");
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
+ gridBagConstraints.insets = new java.awt.Insets(10, 10, 5, 0);
+ pnlSettings.add(jLabel3, gridBagConstraints);
+
+ jPanel2.setLayout(new java.awt.GridBagLayout());
+
+ btnAddSite.setText("Add");
+ btnAddSite.setPreferredSize(new java.awt.Dimension(65, 23));
+ btnAddSite.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
- changeSiteButtonActionPerformed(evt);
+ btnAddSiteActionPerformed(evt);
}
});
gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
+ gridBagConstraints.gridy = 0;
+ gridBagConstraints.insets = new java.awt.Insets(5, 0, 0, 20);
+ jPanel2.add(btnAddSite, gridBagConstraints);
+
+ btnEditSite.setText("Edit");
+ btnEditSite.setPreferredSize(new java.awt.Dimension(65, 23));
+ btnEditSite.addActionListener(new java.awt.event.ActionListener() {
+ public void actionPerformed(java.awt.event.ActionEvent evt) {
+ btnEditSiteActionPerformed(evt);
+ }
+ });
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 1;
+ gridBagConstraints.gridy = 0;
+ gridBagConstraints.insets = new java.awt.Insets(5, 0, 0, 20);
+ jPanel2.add(btnEditSite, gridBagConstraints);
+
+ btnDeleteSite.setText("Delete");
+ btnDeleteSite.addActionListener(new java.awt.event.ActionListener() {
+ public void actionPerformed(java.awt.event.ActionEvent evt) {
+ btnDeleteSiteActionPerformed(evt);
+ }
+ });
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 2;
+ gridBagConstraints.gridy = 0;
+ gridBagConstraints.insets = new java.awt.Insets(5, 0, 0, 20);
+ jPanel2.add(btnDeleteSite, gridBagConstraints);
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
+ gridBagConstraints.gridy = 2;
+ gridBagConstraints.insets = new java.awt.Insets(0, 0, 5, 0);
+ pnlSettings.add(jPanel2, gridBagConstraints);
+
+ lstDownloadSites.setModel(new javax.swing.AbstractListModel() {
+ String[] strings = { "Item 1", "Item 2" };
+ public int getSize() { return strings.length; }
+ public Object getElementAt(int i) { return strings[i]; }
+ });
+ jScrollPane1.setViewportView(lstDownloadSites);
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
gridBagConstraints.gridy = 1;
+ gridBagConstraints.fill = java.awt.GridBagConstraints.BOTH;
+ gridBagConstraints.weightx = 1.0;
+ gridBagConstraints.weighty = 1.0;
+ gridBagConstraints.insets = new java.awt.Insets(0, 10, 5, 10);
+ pnlSettings.add(jScrollPane1, gridBagConstraints);
+
+ jTabbedPane1.addTab("Settings", pnlSettings);
+
+ jSplitPane2.setLeftComponent(jTabbedPane1);
+
+ jPanel3.setLayout(new java.awt.GridBagLayout());
+
+ availablePluginsLabel.setText("Plugins available for download from:");
+ availablePluginsLabel.setEnabled(false);
+ availablePluginsLabel.setFocusable(false);
+ availablePluginsLabel.setInheritsPopupMenu(false);
+ gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
- gridBagConstraints.insets = new java.awt.Insets(0, 0, 5, 10);
- sitePanel.add(changeSiteButton, gridBagConstraints);
+ gridBagConstraints.insets = new java.awt.Insets(10, 10, 5, 0);
+ jPanel3.add(availablePluginsLabel, gridBagConstraints);
versionCheck.setText("Show outdated Plugins");
versionCheck.setBorder(javax.swing.BorderFactory.createEmptyBorder(0,
0, 0, 0));
@@ -536,23 +928,11 @@
gridBagConstraints = new java.awt.GridBagConstraints();
gridBagConstraints.gridx = 0;
- gridBagConstraints.gridy = 2;
+ gridBagConstraints.gridy = 1;
gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
- sitePanel.add(versionCheck, gridBagConstraints);
+ gridBagConstraints.insets = new java.awt.Insets(5, 10, 5, 0);
+ jPanel3.add(versionCheck, gridBagConstraints);
- gridBagConstraints = new java.awt.GridBagConstraints();
- gridBagConstraints.gridy = 1;
- gridBagConstraints.insets = new java.awt.Insets(0, 0, 10, 0);
- topPane.add(sitePanel, gridBagConstraints);
-
- gridBagConstraints = new java.awt.GridBagConstraints();
- gridBagConstraints.gridx = 1;
- gridBagConstraints.gridy = 1;
- gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
- gridBagConstraints.anchor = java.awt.GridBagConstraints.EAST;
- gridBagConstraints.insets = new java.awt.Insets(0, 0, 10, 0);
- getContentPane().add(topPane, gridBagConstraints);
-
jSplitPane1.setDividerLocation(250);
jSplitPane1.setPreferredSize(new java.awt.Dimension(400, 326));
treeScrollPane.setViewportView(pluginTree);
@@ -570,16 +950,16 @@
gridBagConstraints.weightx = 1.0;
gridBagConstraints.weighty = 1.0;
gridBagConstraints.insets = new java.awt.Insets(0, 10, 0, 10);
- getContentPane().add(jSplitPane1, gridBagConstraints);
+ jPanel3.add(jSplitPane1, gridBagConstraints);
- bottomPane.setLayout(new java.awt.GridBagLayout());
-
msgLabel.setText("Messages:");
msgLabel.setEnabled(false);
gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.gridx = 0;
+ gridBagConstraints.gridy = 3;
gridBagConstraints.anchor = java.awt.GridBagConstraints.WEST;
gridBagConstraints.insets = new java.awt.Insets(10, 10, 5, 0);
- bottomPane.add(msgLabel, gridBagConstraints);
+ jPanel3.add(msgLabel, gridBagConstraints);
msgPanel.setBackground(new java.awt.Color(230, 230, 230));
msgPanel.setColumns(20);
@@ -589,13 +969,15 @@
msgPanel.setWrapStyleWord(true);
msgPanel.setMinimumSize(new java.awt.Dimension(30, 50));
gridBagConstraints = new java.awt.GridBagConstraints();
- gridBagConstraints.gridy = 1;
+ gridBagConstraints.gridy = 4;
gridBagConstraints.gridheight = 2;
gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
gridBagConstraints.weightx = 1.0;
gridBagConstraints.insets = new java.awt.Insets(0, 10, 10, 20);
- bottomPane.add(msgPanel, gridBagConstraints);
+ jPanel3.add(msgPanel, gridBagConstraints);
+ bottomPane.setLayout(new java.awt.GridBagLayout());
+
buttonPanel.setLayout(new java.awt.GridBagLayout());
installDeleteButton.setText("Install");
@@ -627,16 +1009,126 @@
bottomPane.add(buttonPanel, gridBagConstraints);
gridBagConstraints = new java.awt.GridBagConstraints();
- gridBagConstraints.gridy = 3;
- gridBagConstraints.gridwidth = 2;
- gridBagConstraints.fill = java.awt.GridBagConstraints.HORIZONTAL;
+ gridBagConstraints.gridy = 4;
+ jPanel3.add(bottomPane, gridBagConstraints);
+
+ jSplitPane2.setRightComponent(jPanel3);
+
+ gridBagConstraints = new java.awt.GridBagConstraints();
+ gridBagConstraints.fill = java.awt.GridBagConstraints.BOTH;
gridBagConstraints.weightx = 1.0;
- getContentPane().add(bottomPane, gridBagConstraints);
+ gridBagConstraints.weighty = 1.0;
+ getContentPane().add(jSplitPane2, gridBagConstraints);
pack();
}// </editor-fold>
+
+
+
+ private void btnDeleteSiteActionPerformed(java.awt.event.ActionEvent evt)
{
+
+ DataSource theDataSource =
(DataSource)this.lstDownloadSites.getSelectedValue();
+
+ if (theDataSource.getName().equalsIgnoreCase("Cytoscape")){
+ JOptionPane.showMessageDialog(this, "Your can not delete
default Cytoscape site", "Warning", JOptionPane.WARNING_MESSAGE);
+ return;
+ }
+
+ int confirm = JOptionPane.showConfirmDialog(this,"Are you sure
you want to " +
+ "delete this site","Delete
Confirm",JOptionPane.OK_CANCEL_OPTION);
+
+ if (confirm == JOptionPane.OK_OPTION){
+ BookmarksUtil.deleteBookmark(theBookmarks,
bookmarkCategory, theDataSource);
+ loadBookmarkCMBox(true); // reload is required to
update the GUI
+ }
+
+ }
+
+ private void btnEditSiteActionPerformed(java.awt.event.ActionEvent evt) {
+
+ DataSource theDataSource = (DataSource)
this.lstDownloadSites.getSelectedValue();
+ EditBookmarkDialog theEditDialog = new EditBookmarkDialog(this, true,
theBookmarks,
+ bookmarkCategory, "edit", theDataSource);
+
+ theEditDialog.setSize(350, 250);
+ theEditDialog.setLocationRelativeTo(this);
+
+ theEditDialog.setVisible(true);
+ loadBookmarkCMBox(true);
+
+ }
+
+ private void btnAddSiteActionPerformed(java.awt.event.ActionEvent evt) {
+ EditBookmarkDialog theNewDialog = new EditBookmarkDialog(this, true,
theBookmarks,
+ bookmarkCategory, "new", null);
+
+ theNewDialog.setSize(350, 250);
+ theNewDialog.setLocationRelativeTo(this);
+ theNewDialog.setVisible(true);
+ theNewDialog.getDataSource();
+ loadBookmarkCMBox(true); // reload is required to update the GUI
+ }
+
+
+ private void btnClearActionPerformed(java.awt.event.ActionEvent evt) {
+ this.switchToMainDialog();
+ this.tfSearch.setText("");
+ this.btnSearch.setEnabled(false);
+ this.versionCheck.setEnabled(true);
+ }
+
+ private void btnBackMainActionPerformed(java.awt.event.ActionEvent evt) {
+ // TODO add your handling code here:
+ }
+
+
+ // Disable btnSearch if there is no text in the Search textfield
+ private void tfSearchKeyTyped(java.awt.event.KeyEvent evt) {
+ if (this.tfSearch.getText().trim().equals("")){
+ this.btnSearch.setEnabled(false);
+ this.switchToMainDialog();
+ this.btnClear.setEnabled(false);
+ this.versionCheck.setEnabled(true);
+ }
+ else {
+ this.btnSearch.setEnabled(true);
+ this.btnClear.setEnabled(true);
+ this.versionCheck.setEnabled(false);
+ }
+ }
+
+ private void tfSearchActionPerformed(java.awt.event.ActionEvent evt) {
+ // Perform the same effect as the click of btnSearch
+ //System.out.println("Entered is pressed in search textField");
+ btnSearchActionPerformed(null);
+ }
+
+ private void btnSearchActionPerformed(java.awt.event.ActionEvent evt) {
+
+ try {
+ Vector filteredPluginVector =
PluginIndex.getSearchResult(this.tfSearch.getText().trim(),this.versionCheck.isSelected(),
downloadLocText.getText());
+
+ if (filteredPluginVector == null){
+ // The index does not exist, build it now
+
+ //This will create new index for the AllPluginVector
+ PluginIndex.setAllPluginVector(this.getAllPluginVector(),
this.versionCheck.isSelected(), downloadLocText.getText());
+ // After the index is created, we can do searching against the
index
+ filteredPluginVector =
PluginIndex.getSearchResult(this.tfSearch.getText().trim(),this.versionCheck.isSelected(),
downloadLocText.getText());
+ }
+
+ updateTreeModel(filteredPluginVector);
+
+ //this.sitePanel.setVisible(false);
+ //this.sitePanel2.setVisible(true);
+ }
+ catch (Exception e){
+ e.printStackTrace();
+ JOptionPane.showMessageDialog(this, "Error in build index for
PluginManager!");
+ }
+ }
-
+
/*
* --- create the tasks and task monitors to show the user what's going
on
* during download/install ---
@@ -683,43 +1175,7 @@
}
}
- public static void main(String[] args) {
- PluginManageDialog pd = new PluginManageDialog();
- pd.setSiteName("Testing");
- List<DownloadableInfo> Plugins = new
java.util.ArrayList<DownloadableInfo>();
- PluginInfo infoC = new PluginInfo("1", "A Plugin");
- infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
- Plugins.add(infoC);
-
- infoC = new PluginInfo("2", "B Plugin");
- infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
- Plugins.add(infoC);
-
- infoC = new PluginInfo("3", "C");
- infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
- Plugins.add(infoC);
-
- pd.addCategory(cytoscape.plugin.Category.NONE.toString(),
Plugins,
- PluginInstallStatus.AVAILABLE);
-
- List<DownloadableInfo> Outdated = new
java.util.ArrayList<DownloadableInfo>();
-
- PluginInfo infoOD = new PluginInfo("11", "CyGoose");
- infoOD.addCytoscapeVersion("2.3");
- Outdated.add(infoOD);
-
- infoOD = new PluginInfo("12", "Y");
- infoOD.addCytoscapeVersion("2.3");
- Outdated.add(infoOD);
-
- pd.addCategory("Outdated", Outdated,
PluginInstallStatus.AVAILABLE);
-
- pd.setMessage("Foo bar");
-
- pd.setVisible(true);
- }
-
/** Returns an ImageIcon, or null if the path was invalid. */
private javax.swing.ImageIcon createImageIcon(String path,
String description) {
@@ -838,27 +1294,189 @@
}
- private javax.swing.JLabel availablePluginsLabel;
- private javax.swing.JPanel bottomPane;
- private javax.swing.JPanel buttonPanel;
- private javax.swing.JButton changeSiteButton;
- private javax.swing.JButton closeButton;
- private javax.swing.JScrollPane infoScrollPane;
- private javax.swing.JEditorPane infoTextPane;
- private javax.swing.JButton installDeleteButton;
- private javax.swing.JSplitPane jSplitPane1;
- private javax.swing.JTextArea downloadLocText;
- private javax.swing.JLabel msgLabel;
- private javax.swing.JTextArea msgPanel;
- private javax.swing.JTree pluginTree;
- private javax.swing.JPanel sitePanel;
- private javax.swing.JPanel topPane;
- private javax.swing.JScrollPane treeScrollPane;
- private javax.swing.JCheckBox versionCheck;
- private TreeNode rootTreeNode;
+ // Variables declaration - do not modify
+ private javax.swing.JLabel availablePluginsLabel;
+ private javax.swing.JPanel bottomPane;
+ private javax.swing.JButton btnAddSite;
+ private javax.swing.JButton btnClear;
+ private javax.swing.JButton btnDeleteSite;
+ private javax.swing.JButton btnEditSite;
+ private javax.swing.JButton btnSearch;
+ private javax.swing.JPanel buttonPanel;
+ private javax.swing.JButton closeButton;
+ private javax.swing.JLabel downloadLocText;
+ private javax.swing.JScrollPane infoScrollPane;
+ private javax.swing.JEditorPane infoTextPane;
+ private javax.swing.JButton installDeleteButton;
+ private javax.swing.JLabel jLabel3;
+ private javax.swing.JPanel jPanel2;
+ private javax.swing.JPanel jPanel3;
+ private javax.swing.JScrollPane jScrollPane1;
+ private javax.swing.JSplitPane jSplitPane1;
+ private javax.swing.JSplitPane jSplitPane2;
+ private javax.swing.JTabbedPane jTabbedPane1;
+ private javax.swing.JLabel lbSearchTitle;
+ private javax.swing.JList lstDownloadSites;
+ private javax.swing.JLabel msgLabel;
+ private javax.swing.JTextArea msgPanel;
+ private javax.swing.JTree pluginTree;
+ private javax.swing.JPanel pnlSearch;
+ private javax.swing.JPanel pnlSettings;
+ private javax.swing.JPanel sitePanel;
+ private javax.swing.JTextField tfSearch;
+ private javax.swing.JPanel topPane;
+ private javax.swing.JScrollPane treeScrollPane;
+ private javax.swing.JCheckBox versionCheck;
+ // End of variables declaration
+
+ private TreeNode rootTreeNode;
private TreeNode installedNode;
private TreeNode availableNode;
private ManagerModel treeModel;
private TreeCellRenderer treeRenderer;
private java.util.HashMap<TreeNode, java.util.List<TreeNode>>
hiddenNodes;
+
+
+ // loads the combo box for bookmarks
+ private void loadBookmarkCMBox(boolean selectLast) {
+ DefaultComboBoxModel theModel = new DefaultComboBoxModel();
+
+ // Extract the URL entries
+ List<DataSource> theDataSourceList =
BookmarksUtil.getDataSourceList(
+ bookmarkCategory, theBookmarks.getCategory());
+
+ if (theDataSourceList != null) {
+ for (DataSource Current : theDataSourceList) {
+ theModel.addElement(Current);
+ if (selectLast)
+ theModel.setSelectedItem(Current);
+ }
+ }
+
+ this.lstDownloadSites.setModel(theModel);
+ }
+
+ private String bookmarkCategory = "plugins";
+ private Bookmarks theBookmarks;
+ /*
+ * Sets up the bookmarks for plugin download sites
+ */
+ private void bookmarksSetUp() {
+ try {
+ theBookmarks = Cytoscape.getBookmarks();
+ } catch (Exception E) {
+ JOptionPane.showMessageDialog(Cytoscape.getDesktop(),
+ "Failed to retrieve bookmarks for
plugin download sites.",
+ "Error", JOptionPane.ERROR_MESSAGE);
+ logger.warn("Failed to retrieve bookmarks for plugin
download sites.", E);
+
+ return;
+ }
+
+ // if theBookmarks does not exist, create an empty one
+ if (theBookmarks == null) {
+ theBookmarks = new Bookmarks();
+ Cytoscape.setBookmarks(theBookmarks);
+ }
+
+ }
+
+ private static final Color HIGHLIGHT_COLOR = new Color(0, 0, 128);
+
+ // required to make the text of the data source show up correctly in the
+ // combo box
+ private class BookmarkCellRenderer extends JLabel implements
+ ListCellRenderer {
+
+ public BookmarkCellRenderer() {
+ setOpaque(true);
+ }
+
+ public Component getListCellRendererComponent(JList list,
Object value,
+ int index, boolean isSelected, boolean
cellHasFocus) {
+ DataSource dataSource = (DataSource) value;
+ setText(dataSource.getName());
+
+ setToolTipText(dataSource.getHref());
+
+ if (isSelected) {
+ setBackground(HIGHLIGHT_COLOR);
+ setForeground(Color.white);
+ } else {
+ setBackground(Color.white);
+ setForeground(Color.black);
+ }
+
+ return this;
+ }
+ }
+
+
+ private class MyListSelectionListener implements ListSelectionListener {
+
+ private int clickCount =0;
+
+ public void valueChanged(ListSelectionEvent ev){
+ clickCount++;
+
+ JList list = (JList) ev.getSource();
+ if (list.getSelectedIndices().length == 0){
+ return;
+ }
+
+ if (clickCount % 2 == 0){
+ //This is a work-around to handle two events --
from mouse press and mouse release
+ // Reset the click counter
+ clickCount = 0;
+ return;
+ }
+
+ DataSource dataSource = (DataSource)
list.getSelectedValue();
+
+ String urlStr = dataSource.getHref();
+ if
(!PluginManageDialog.this.currentPluginSiteURL.equalsIgnoreCase(urlStr)){
+ PluginManageDialog.this.currentPluginSiteURL =
urlStr;
+ PluginManageDialog.this.refreshPluginTree();
+ }
+ }
+ }
+
+
+ public static void main(String[] args) {
+ PluginManageDialog pd = new PluginManageDialog();
+ //pd.setSiteName("Testing");
+ List<DownloadableInfo> Plugins = new
java.util.ArrayList<DownloadableInfo>();
+
+ PluginInfo infoC = new PluginInfo("1", "A Plugin");
+ infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
+ Plugins.add(infoC);
+
+ infoC = new PluginInfo("2", "B Plugin");
+ infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
+ Plugins.add(infoC);
+
+ infoC = new PluginInfo("3", "C");
+ infoC.addCytoscapeVersion(cytoscape.CytoscapeVersion.version);
+ Plugins.add(infoC);
+
+ pd.addCategory(cytoscape.plugin.Category.NONE.toString(),
Plugins,
+ PluginInstallStatus.AVAILABLE);
+
+ List<DownloadableInfo> Outdated = new
java.util.ArrayList<DownloadableInfo>();
+
+ PluginInfo infoOD = new PluginInfo("11", "CyGoose");
+ infoOD.addCytoscapeVersion("2.3");
+ Outdated.add(infoOD);
+
+ infoOD = new PluginInfo("12", "Y");
+ infoOD.addCytoscapeVersion("2.3");
+ Outdated.add(infoOD);
+
+ pd.addCategory("Outdated", Outdated,
PluginInstallStatus.AVAILABLE);
+
+ pd.setMessage("Foo bar");
+
+ pd.setVisible(true);
+ }
+
}
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