Author: mes
Date: 2010-07-22 17:43:31 -0700 (Thu, 22 Jul 2010)
New Revision: 21007

Removed:
   corelibs/trunk/commons-cli-1.x-cytocape-custom/build-gump.xml
   corelibs/trunk/commons-cli-1.x-cytocape-custom/build.xml
   corelibs/trunk/commons-cli-1.x-cytocape-custom/doap_cli.rdf
   corelibs/trunk/commons-cli-1.x-cytocape-custom/gump.xml
   corelibs/trunk/commons-cli-1.x-cytocape-custom/maven.xml
   corelibs/trunk/commons-cli-1.x-cytocape-custom/project.properties
   corelibs/trunk/commons-cli-1.x-cytocape-custom/project.xml
   corelibs/trunk/commons-cli-1.x-cytocape-custom/style.css
   corelibs/trunk/commons-cli-1.x-cytocape-custom/xdocs/
Log:
cleaned up more files

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/build-gump.xml
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/build-gump.xml       
2010-07-23 00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/build-gump.xml       
2010-07-23 00:43:31 UTC (rev 21007)
@@ -1,36 +0,0 @@
-<!--
-
-  WARNING: This file is generated! Do not edit by hand!
-  
--->
-
-<project name="maven" default="jar" basedir=".">
-
-  <target
-    name="jar">
-    
-    <property name="maven.build.dir" value="target"/>
-    <property name="maven.build.dest" value="${maven.build.dir}/classes"/>
-    
-    <mkdir dir="${maven.build.dest}"/>
-    
-    <javac
-      destdir="${maven.build.dest}"
-      excludes="**/package.html"
-      debug="false"
-      deprecation="false"
-      optimize="false">
-      <src>
-         <pathelement location="src/java"/>
-      </src>
-    </javac>
-
-    <jar
-      jarfile="${maven.build.dir}/${maven.final.name}.jar"
-      basedir="${maven.build.dest}"
-      excludes="**/package.html"
-    />
-    
-  </target>
-
-</project>

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/build.xml
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/build.xml    2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/build.xml    2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,231 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<!--build.xml generated by maven from project.xml version 2.0-SNAPSHOT
-  on date March 3 2006, time 1447-->
-
-<project default="jar" name="commons-cli" basedir=".">
-  <!--Load local and user build preferences-->
-
-  <property file="build.properties">
-  </property>
-  <property file="${user.home}/build.properties">
-  </property>
-  <!--Build properties-->
-
-  <property name="defaulttargetdir" value="${basedir}/target">
-  </property>
-  <property name="libdir" value="${user.home}/.maven/repository">
-  </property>
-  <property name="classesdir" value="${basedir}/target/classes">
-  </property>
-  <property name="testclassesdir" value="${basedir}/target/test-classes">
-  </property>
-  <property name="testreportdir" value="${basedir}/target/test-reports">
-  </property>
-  <property name="distdir" value="${basedir}/dist">
-  </property>
-  <property name="javadocdir" value="${basedir}/dist/docs/api">
-  </property>
-  <property name="final.name" value="commons-cli-1.x-cytoscape-custom">
-  </property>
-  <property name="proxy.host" value="">
-  </property>
-  <property name="proxy.port" value="">
-  </property>
-  <property name="proxy.username" value="">
-  </property>
-  <property name="proxy.password" value="">
-  </property>
-  <path id="build.classpath">
-    <pathelement location="${libdir}/commons-lang/jars/commons-lang-2.1.jar">
-    </pathelement>
-    <pathelement location="${libdir}/junit/jars/junit-3.8.1.jar">
-    </pathelement>
-    <pathelement location="${libdir}/jdepend/jars/jdepend-2.5.jar">
-    </pathelement>
-  </path>
-  <target name="init" description="o Initializes some properties">
-    <mkdir dir="${libdir}">
-    </mkdir>
-    <condition property="noget">
-      <equals arg2="only" arg1="${build.sysclasspath}">
-      </equals>
-    </condition>
-    <!--Test if JUNIT is present in ANT classpath-->
-
-    <available property="Junit.present" classname="junit.framework.Test">
-    </available>
-    <!--Test if user defined a proxy-->
-
-    <condition property="useProxy">
-      <and>
-        <isset property="proxy.host">
-        </isset>
-        <not>
-          <equals trim="true" arg2="" arg1="${proxy.host}">
-          </equals>
-        </not>
-      </and>
-    </condition>
-  </target>
-  <target name="compile" description="o Compile the code" depends="get-deps">
-    <mkdir dir="${classesdir}">
-    </mkdir>
-    <javac destdir="${classesdir}" deprecation="true" debug="true" 
optimize="false" source="1.5" target="1.5" excludes="**/package.html">
-      <src>
-        <pathelement location="${basedir}/src/java">
-        </pathelement>
-      </src>
-      <classpath refid="build.classpath">
-      </classpath>
-    </javac>
-  </target>
-  <target name="jar" description="o Create the jar" depends="compile,test">
-    <jar jarfile="${defaulttargetdir}/${final.name}.jar" 
excludes="**/package.html" basedir="${classesdir}">
-    </jar>
-  </target>
-  <target name="clean" description="o Clean up the generated directories">
-    <delete dir="${defaulttargetdir}">
-    </delete>
-    <delete dir="${distdir}">
-    </delete>
-  </target>
-  <target name="dist" description="o Create a distribution" depends="jar, 
javadoc">
-    <mkdir dir="dist">
-    </mkdir>
-    <copy todir="dist">
-      <fileset dir="${defaulttargetdir}" includes="*.jar">
-      </fileset>
-      <fileset dir="${basedir}" includes="LICENSE*, README*">
-      </fileset>
-    </copy>
-  </target>
-  <target name="test" description="o Run the test cases" if="test.failure" 
depends="internal-test">
-    <fail message="There were test failures.">
-    </fail>
-  </target>
-  <target name="internal-test" if="Junit.present" 
depends="junit-present,compile-tests">
-    <mkdir dir="${testreportdir}">
-    </mkdir>
-    <junit dir="${basedir}" failureproperty="test.failure" printSummary="yes" 
fork="true" haltonerror="true">
-      <sysproperty key="basedir" value=".">
-      </sysproperty>
-      <formatter type="xml">
-      </formatter>
-      <formatter usefile="false" type="plain">
-      </formatter>
-      <classpath>
-        <path refid="build.classpath">
-        </path>
-        <pathelement path="${testclassesdir}">
-        </pathelement>
-        <pathelement path="${classesdir}">
-        </pathelement>
-      </classpath>
-      <batchtest todir="${testreportdir}">
-        <fileset dir="${basedir}/src/test">
-          <include name="**/Test*.java">
-          </include>
-          <include name="**/*Test.java">
-          </include>
-        </fileset>
-      </batchtest>
-    </junit>
-  </target>
-  <target name="junit-present" unless="Junit.present" depends="init">
-    <echo>================================= WARNING 
================================</echo>
-    <echo>Junit isn't present in your ${ANT_HOME}/lib directory. Tests not 
executed.</echo>
-    
<echo>==========================================================================</echo>
-  </target>
-  <target name="compile-tests" if="Junit.present" 
depends="junit-present,compile">
-    <mkdir dir="${testclassesdir}">
-    </mkdir>
-    <javac destdir="${testclassesdir}" deprecation="true" debug="true" 
optimize="false" excludes="**/package.html">
-      <src>
-        <pathelement location="${basedir}/src/test">
-        </pathelement>
-      </src>
-      <classpath>
-        <path refid="build.classpath">
-        </path>
-        <pathelement path="${classesdir}">
-        </pathelement>
-      </classpath>
-    </javac>
-  </target>
-  <target name="javadoc" description="o Generate javadoc" depends="get-deps">
-    <mkdir dir="${javadocdir}">
-    </mkdir>
-    <tstamp>
-      <format pattern="2002-yyyy" property="year">
-      </format>
-    </tstamp>
-    <property name="copyright" value="Copyright &amp;copy;  Apache Software 
Foundation. All Rights Reserved.">
-    </property>
-    <property name="title" value="CLI 2.0-SNAPSHOT API">
-    </property>
-    <javadoc use="true" private="true" destdir="${javadocdir}" author="true" 
version="true" sourcepath="${basedir}/src/java" 
packagenames="org.apache.commons.*">
-      <classpath>
-        <path refid="build.classpath">
-        </path>
-      </classpath>
-    </javadoc>
-  </target>
-  <target name="get-dep-commons-lang.jar" description="o Download the 
dependency : commons-lang.jar" unless="commons-lang.jar" 
depends="init,setProxy,noProxy,get-custom-dep-commons-lang.jar">
-    <mkdir dir="${libdir}/commons-lang/jars/">
-    </mkdir>
-    <get dest="${libdir}/commons-lang/jars/commons-lang-2.1.jar" 
usetimestamp="true" ignoreerrors="true" 
src="http://www.ibiblio.org/maven/commons-lang/jars/commons-lang-2.1.jar";>
-    </get>
-  </target>
-  <target name="get-custom-dep-commons-lang.jar" if="commons-lang.jar" 
depends="init,setProxy,noProxy">
-    <mkdir dir="${libdir}/commons-lang/jars/">
-    </mkdir>
-    <get dest="${libdir}/commons-lang/jars/commons-lang-2.1.jar" 
usetimestamp="true" ignoreerrors="true" src="${commons-lang.jar}">
-    </get>
-  </target>
-  <target name="get-dep-junit.jar" description="o Download the dependency : 
junit.jar" unless="junit.jar" 
depends="init,setProxy,noProxy,get-custom-dep-junit.jar">
-    <mkdir dir="${libdir}/junit/jars/">
-    </mkdir>
-    <get dest="${libdir}/junit/jars/junit-3.8.1.jar" usetimestamp="true" 
ignoreerrors="true" 
src="http://www.ibiblio.org/maven/junit/jars/junit-3.8.1.jar";>
-    </get>
-  </target>
-  <target name="get-custom-dep-junit.jar" if="junit.jar" 
depends="init,setProxy,noProxy">
-    <mkdir dir="${libdir}/junit/jars/">
-    </mkdir>
-    <get dest="${libdir}/junit/jars/junit-3.8.1.jar" usetimestamp="true" 
ignoreerrors="true" src="${junit.jar}">
-    </get>
-  </target>
-  <target name="get-dep-jdepend.jar" description="o Download the dependency : 
jdepend.jar" unless="jdepend.jar" 
depends="init,setProxy,noProxy,get-custom-dep-jdepend.jar">
-    <mkdir dir="${libdir}/jdepend/jars/">
-    </mkdir>
-    <get dest="${libdir}/jdepend/jars/jdepend-2.5.jar" usetimestamp="true" 
ignoreerrors="true" 
src="http://www.ibiblio.org/maven/jdepend/jars/jdepend-2.5.jar";>
-    </get>
-  </target>
-  <target name="get-custom-dep-jdepend.jar" if="jdepend.jar" 
depends="init,setProxy,noProxy">
-    <mkdir dir="${libdir}/jdepend/jars/">
-    </mkdir>
-    <get dest="${libdir}/jdepend/jars/jdepend-2.5.jar" usetimestamp="true" 
ignoreerrors="true" src="${jdepend.jar}">
-    </get>
-  </target>
-  <target name="get-deps" unless="noget" 
depends="get-dep-commons-lang.jar,get-dep-junit.jar,get-dep-jdepend.jar">
-  </target>
-  <target name="setProxy" if="useProxy" depends="init">
-    <!--Proxy settings works only with a JDK 1.2 and higher.-->
-
-    <echo>Proxy used :</echo>
-    <echo>Proxy host [${proxy.host}]</echo>
-    <echo>Proxy port [${proxy.port}]</echo>
-    <echo>Proxy user [${proxy.username}]</echo>
-    <setproxy proxyuser="${proxy.username}" proxyport="${proxy.port}" 
proxypassword="${proxy.password}" proxyhost="${proxy.host}">
-    </setproxy>
-  </target>
-  <target name="noProxy" unless="useProxy" depends="init">
-    <echo>Proxy not used.</echo>
-  </target>
-  <target name="install-maven">
-    <get dest="${user.home}/maven-install-latest.jar" usetimestamp="true" 
src="${repo}/maven/maven-install-latest.jar">
-    </get>
-    <unjar dest="${maven.home}" src="${user.home}/maven-install-latest.jar">
-    </unjar>
-  </target>
-</project>

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/doap_cli.rdf
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/doap_cli.rdf 2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/doap_cli.rdf 2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,32 +0,0 @@
-<?xml version="1.0"?>
-<rdf:RDF xmlns="http://usefulinc.com/ns/doap#"; 
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"; 
xmlns:asfext="http://projects.apache.org/ns/asfext#"; 
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"; 
xmlns:doap="http://usefulinc.com/ns/doap#"; xml:lang="en">
-  <Project rdf:about="http://jakarta.apache.org/commons/cli/";>
-    <name>Apache Jakarta Commons CLI</name>
-    <homepage rdf:resource="http://jakarta.apache.org/commons/cli/"/>
-    <programming-language>Java</programming-language>
-    <category rdf:resource="http://projects.apache.org/category/library"/>
-    <license rdf:resource="http://usefulinc.com/doap/licenses/asl20"/>
-    <bug-database 
rdf:resource="http://issues.apache.org/bugzilla/buglist.cgi?product=Commons&amp;component=cli"/>
-    <download-page 
rdf:resource="http://jakarta.apache.org/site/downloads/downloads_commons-cli.cgi"/>
-    <asfext:pmc rdf:resource="http://jakarta.apache.org/"/>
-    <shortdesc xml:lang="en">Commons CLI</shortdesc>
-    <description xml:lang="en">
-    Commons CLI provides a simple API for presenting, proecessing and
-    validating a command line interface.
-  </description>
-    <repository>
-      <SVNRepository>
-        <browse 
rdf:resource="http://svn.apache.org/repos/asf/jakarta/commons/proper/cli/trunk"/>
-        <location 
rdf:resource="http://svn.apache.org/repos/asf/jakarta/commons/proper/cli"/>
-      </SVNRepository>
-    </repository>
-    <release>
-      <revision>
-        <name>commons-cli</name>
-        <created>2002-12-27</created>
-        <version>1.0</version>
-      </revision>
-    </release>
-    <mailing-list 
rdf:resource="http://jakarta.apache.org/site/mail2.html#Commons"/>
-  </Project>
-</rdf:RDF>

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/gump.xml
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/gump.xml     2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/gump.xml     2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-
-<module name="commons-cli">
-  <description>Commons CLI</description>
-  <url href="http://jakarta.apache.org/commons/cli/";>
-  </url>
-  <cvs module="jakarta-commons/cli" repository="jakarta">
-  </cvs>
-  <project name="commons-cli">
-    <maven goal="jar">
-      <property name="final.name" value="commons-cli-@@DATE@@">
-      </property>
-    </maven>
-    <package>org.apache.commons.cli</package>
-    <depend project="commons-lang">
-    </depend>
-    <depend project="jakarta-ant">
-    </depend>
-    <depend project="jdepend">
-    </depend>
-    <depend project="junit">
-    </depend>
-    <depend project="xml-xerces">
-    </depend>
-    <work nested="target/classes">
-    </work>
-    <home nested="target">
-    </home>
-    <jar name="commons-cli-@@DATE@@.jar">
-    </jar>
-    <javadoc module="jakarta-commons" nested="target/docs/apidocs">
-    </javadoc>
-    <nag to="[email protected]" from="commons-cli development 
&lt;[email protected]&gt;">
-    </nag>
-  </project>
-</module>
\ No newline at end of file

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/maven.xml
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/maven.xml    2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/maven.xml    2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,48 +0,0 @@
-<!--
-Copyright 2002-2006 The Apache Software Foundation.
-
-Licensed under the Apache License, Version 2.0 (the "License");
-you may not use this file except in compliance with the License.
-You may obtain a copy of the License at
-
-     http://www.apache.org/licenses/LICENSE-2.0
-
-Unless required by applicable law or agreed to in writing, software
-distributed under the License is distributed on an "AS IS" BASIS,
-WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-See the License for the specific language governing permissions and
-limitations under the License.
--->
-<project default="jar:jar">
-
-  <!-- Ensures that the conf directory and NOTICE.txt are included in the
-       source distro.
-   -->
-  <postGoal name="dist:prepare-src-filesystem">
-    <copy todir="${maven.dist.src.assembly.dir}">
-      <fileset file="${basedir}/NOTICE.txt"/>
-    </copy>
-  </postGoal>
-
-  <!-- Ensures that NOTICE.txt is added to the binary distro -->
-  <preGoal name="dist:build-bin">
-    <copy todir="${maven.dist.bin.assembly.dir}">
-      <fileset file="${basedir}/NOTICE.txt"/>
-    </copy>
-  </preGoal>
-
-  <postGoal name="test:test-resources">
-    <echo>Moving test bundle.</echo>        
-    <copy 
file="src/test/org/apache/commons/cli2/resource/TestBundle.properties"
-            
tofile="target/test-classes/org/apache/commons/cli2/resource/TestBundle.properties"/>
      
-  </postGoal>
-
- <preGoal name="dist:prepare-bin-filesystem">
-   <attainGoal name="ant:generate-build"/>
- </preGoal>
-
- <preGoal name="dist:prepare-src-filesystem">
-   <attainGoal name="ant:generate-build"/>
- </preGoal>
-
-</project>

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/project.properties
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/project.properties   
2010-07-23 00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/project.properties   
2010-07-23 00:43:31 UTC (rev 21007)
@@ -1,32 +0,0 @@
-# -------------------------------------------------------------------
-# P R O J E C T  P R O P E R T I E S
-# -------------------------------------------------------------------
-maven.changelog.factory=org.apache.maven.svnlib.SvnChangeLogFactory
-
-compile.debug = on
-compile.optimize = off
-compile.deprecation = off
-
-maven.compile.source=1.3
-maven.compile.target=1.3
-
-maven.jarResources.basedir=${basedir}/src/java
-
-# Reset the checkstyle properties to use the default sun settings
-maven.checkstyle.properties=
-maven.checkstyle.format=sun
-
-maven.xdoc.date=left
-maven.xdoc.version=${pom.currentVersion}
-maven.xdoc.developmentProcessUrl=http://jakarta.apache.org/commons/charter.html
-maven.xdoc.poweredby.image=maven-feather.png
-
-maven.javadoc.links=http://java.sun.com/j2se/1.4/docs/api/
-#maven.javadoc.stylesheet=${basedir}/style.css
-
-# Jar Manifest and Additional Attributes
-maven.jar.manifest=${basedir}/src/conf/MANIFEST.MF
-maven.jar.manifest.attributes.list=Implementation-Vendor-Id,X-Compile-Source-JDK,X-Compile-Target-JDK
-maven.jar.manifest.attribute.Implementation-Vendor-Id=org.apache
-maven.jar.manifest.attribute.X-Compile-Source-JDK=${maven.compile.source}
-maven.jar.manifest.attribute.X-Compile-Target-JDK=${maven.compile.target}

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/project.xml
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/project.xml  2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/project.xml  2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,215 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-   Copyright 2001-2006 The Apache Software Foundation
-
-   Licensed under the Apache License, Version 2.0 (the "License");
-   you may not use this file except in compliance with the License.
-   You may obtain a copy of the License at
-
-       http://www.apache.org/licenses/LICENSE-2.0
-
-   Unless required by applicable law or agreed to in writing, software
-   distributed under the License is distributed on an "AS IS" BASIS,
-   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-   See the License for the specific language governing permissions and
-   limitations under the License.
--->
-<project>
-  <groupId>commons-cli</groupId>
-  <artifactId>commons-cli</artifactId>
-  <name>CLI</name>
-  <currentVersion>2.0-SNAPSHOT</currentVersion>
-  <inceptionYear>2002</inceptionYear>
-  <shortDescription>Commons CLI</shortDescription>
-  <description>
-    Commons CLI provides a simple API for presenting, proecessing and
-    validating a command line interface.
-  </description>
-  <logo>/images/logo.png</logo>
-
-  <url>http://jakarta.apache.org/commons/cli/</url>
-  <package>org.apache.commons</package>
-
-  <organization>
-    <name>Apache Software Foundation</name>
-    <url>http://www.apache.org</url>
-    <logo>http://jakarta.apache.org/images/original-jakarta-logo.gif</logo>
-  </organization>
-
-  <licenses>
-    <license>
-      <name>The Apache Software License, Version 2.0</name>
-      <url>/LICENSE.txt</url>
-      <distribution>repo</distribution>
-    </license>
-  </licenses>
-
-  <gumpRepositoryId>jakarta</gumpRepositoryId>
-  <issueTrackingUrl>http://issues.apache.org/bugzilla/</issueTrackingUrl>
-  <siteAddress>people.apache.org</siteAddress>
-  <siteDirectory>/www/jakarta.apache.org/commons/cli/</siteDirectory>
-  
<distributionDirectory>/www/jakarta.apache.org/builds/jakarta-commons/cli/</distributionDirectory>
-
-  <repository>
-    
<connection>scm:svn:http://svn.apache.org/repos/asf/jakarta/commons/proper/cli/trunk</connection>
-    <url>http://svn.apache.org/repos/asf/jakarta/commons/proper/cli/trunk</url>
-  </repository>
-
-  <mailingLists>
-    <mailingList>
-      <name>Commons Dev List</name>
-      <subscribe>[email protected]</subscribe>
-      <unsubscribe>[email protected]</unsubscribe>
-      
<archive>http://mail-archives.apache.org/eyebrowse/[email protected]</archive>
-    </mailingList>
-    <mailingList>
-      <name>Commons User List</name>
-      <subscribe>[email protected]</subscribe>
-      <unsubscribe>[email protected]</unsubscribe>
-      
<archive>http://mail-archives.apache.org/eyebrowse/[email protected]</archive>
-    </mailingList>
-  </mailingLists>
-
-  <developers>
-    <developer>
-      <name>James Strachan</name>
-      <id>jstrachan</id>
-      <email>[email protected]</email>
-      <organization>SpiritSoft, Inc.</organization>
-    </developer>
-    <developer>
-      <name>Bob McWhirter</name>
-      <id>bob</id>
-      <email>[email protected]</email>
-      <organization>Werken</organization>
-      <roles>
-        <role>contributed ideas and code from werken.opt</role>
-      </roles>
-    </developer>
-    <developer>
-      <name>John Keyes</name>
-      <id>jkeyes</id>
-      <email>[email protected]</email>
-      <organization>integral Source</organization>
-      <roles>
-        <role>contributed ideas and code from Optz</role>
-      </roles>
-    </developer>
-    <developer>
-      <name>Rob Oxspring</name>
-      <id>roxspring</id>
-      <email>[email protected]</email>
-      <organization>Indigo Stone</organization>
-      <roles>
-        <role>designed CLI2</role>
-      </roles>
-    </developer>
-  </developers>
-
-  <contributors>
-    <contributor>
-      <name>Peter Donald</name>
-      <roles>
-        <role>contributed ideas and code from Avalon Excalibur's cli 
package</role>
-      </roles>
-    </contributor>
-    <contributor>
-      <name>Berin Loritsch</name>
-      <email>[email protected]</email>
-      <roles>
-        <role>helped in the Avalon CLI merge</role>
-      </roles>
-    </contributor>
-    <contributor>
-      <name>Peter Maddocks</name>
-      <email>[email protected]</email>
-      <organization>Hewlett-Packard</organization>
-      <roles>
-        <role>supplied patch</role>
-      </roles>
-    </contributor>
-  </contributors>
-
-  <dependencies>
-
-    <!-- used in PatternOptionBuilder -->
-    <dependency>
-      <groupId>commons-lang</groupId>
-      <artifactId>commons-lang</artifactId>
-      <version>2.1</version>
-    </dependency>
-
-    <!-- used for unit tests -->
-    <dependency>
-      <groupId>junit</groupId>
-      <artifactId>junit</artifactId>
-      <version>3.8.1</version>
-      <properties>
-       <scope>test</scope>
-       <comment>
-        Required only for testing.
-       </comment>
-      </properties>
-    </dependency>
-
-    <!-- used for unit tests -->
-    <dependency>
-      <groupId>jdepend</groupId>
-      <artifactId>jdepend</artifactId>
-      <version>2.5</version>
-      <properties>
-       <scope>test</scope>
-       <comment>
-        Required only for testing.
-       </comment>
-      </properties>
-    </dependency>
-
-  </dependencies>
-
-  <build>
-    <nagEmailAddress>[email protected]</nagEmailAddress>
-    <sourceDirectory>src/java</sourceDirectory>
-    <unitTestSourceDirectory>src/test</unitTestSourceDirectory>
-    <integrationUnitTestSourceDirectory/>
-    <aspectSourceDirectory/>
-    <resources>
-        <resource>
-          <directory>src/java/org/apache/commons/cli2</directory>
-          <targetPath>org/apache/commons/cli2</targetPath>
-          <includes>
-            <include>**/*.properties</include>
-          </includes>
-        </resource>
-    </resources>
-
-    <!-- Unit test classes -->
-    <unitTest>
-      <includes>
-        <include>**/Test*.java</include>
-        <include>**/*Test.java</include>
-      </includes>
-    </unitTest>
-  </build>
-
-  <reports>
-    <!--report>maven-developer-activity-plugin</report-->
-    <!--report>maven-file-activity-plugin</report-->
-    <!--report>maven-changelog-plugin</report-->
-    <!--report>maven-changes-plugin</report-->
-    <report>maven-jdepend-plugin</report>
-    <report>maven-checkstyle-plugin</report>
-    <report>maven-javadoc-plugin</report>
-    <report>maven-jdepend-plugin</report>
-    <report>maven-junit-report-plugin</report>
-    <report>maven-jxr-plugin</report>
-    <report>maven-license-plugin</report>
-    <report>maven-tasklist-plugin</report>
-    <report>maven-pmd-plugin</report>
-    <!--report>maven-simian-plugin</report>
-    <report>maven-faq-plugin</report>
-    <report>maven-jcoverage-plugin</report-->
-    <!--report>maven-tasks-plugin</report-->
-    <!--report>maven-findbugs-plugin</report-->
-  </reports>
-</project>

Deleted: corelibs/trunk/commons-cli-1.x-cytocape-custom/style.css
===================================================================
--- corelibs/trunk/commons-cli-1.x-cytocape-custom/style.css    2010-07-23 
00:40:11 UTC (rev 21006)
+++ corelibs/trunk/commons-cli-1.x-cytocape-custom/style.css    2010-07-23 
00:43:31 UTC (rev 21007)
@@ -1,39 +0,0 @@
-body {
-    font-family: "Verdana", "Arial", sans-serif;
-    font-size: 10pt;
-}
-
-h1 {
-    font-size: 12pt;
-}
-  
-h2, h3, .TableHeadingColor b, .FrameTitleFont, .FrameHeadingFont {
-    font-size: 10pt;
-    font-weight: bold;
-}
-
-a b, .TableRowColor b, .NavBarCell1 b, .NavBarCell2 b {
-    font-weight: normal;
-}
-
-tr, td {
-    border: none;
-}
-
-.TableHeadingColor td {
-    border-bottom: 1px solid #666;
-}
-
-.TableRowColor td {
-    padding-bottom: 5px;
-    border-bottom: 1px solid #CCC;
-}
-
-a:link, a:visited, a:active {
-    text-decoration:none;
-    color: blue;
-}
-
-a:hover {
-    text-decoration: underline;
-}

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