See <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/1221/changes>
Changes: [ruschein] Ported some tests from Cytoscape 2.8. ------------------------------------------ [...truncated 145 lines...] Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//HalfTopArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//NoArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//TeeArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//EdgeAnchors.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//GraphGraphics.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/overview-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/export//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/export//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/export//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//package-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//package-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//package-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//package-tree.html...> Generating 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<http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/LegacyCustomNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/VeeNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/TriangleNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/RectangleNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/RoundedRectangleNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/ParallelogramNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/EllipseNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/OctagonNodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//class-use/NodeShape.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/DeltaArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/ArrowheadArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/NoArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/DiamondArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/HalfTopArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/DiscArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/HalfBottomArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/TeeArrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//class-use/Arrow.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//class-use/GraphGraphics.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//class-use/EdgeAnchors.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/export//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/arrow//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/immed/nodeshape//package-use.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/org/cytoscape/graph/render/stateful//package-use.html...> Building index for all the packages and classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/overview-tree.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/index-all.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/deprecated-list.html...> Building index for all classes... Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/allclasses-frame.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/allclasses-noframe.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/index.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/overview-summary.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/help-doc.html...> Generating <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/apidocs/stylesheet.css...> 3 warnings [WARNING] Javadoc Warnings [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java>:493: warning - @return tag has no arguments. [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java>:369: warning - Tag @see: can't find graphicNodeAnchor(int, int) in org.cytoscape.graph.render.stateful.NodeDetails [WARNING] <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/src/main/java/org/cytoscape/graph/render/stateful/NodeDetails.java>:384: warning - Tag @see: can't find graphicNodeAnchor(int, int) in org.cytoscape.graph.render.stateful.NodeDetails [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-javadoc.jar> [INFO] Preparing source:jar [WARNING] Removing: jar from forked lifecycle, to prevent recursive invocation. [INFO] No goals needed for project - skipping [INFO] [source:jar {execution: attach-sources}] [INFO] Building jar: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-sources.jar> [INFO] [install:install] [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT.jar> to /home/bturner/.m2/repository/org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-SNAPSHOT.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-javadoc.jar> to /home/bturner/.m2/repository/org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-SNAPSHOT-javadoc.jar [INFO] Installing <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-sources.jar> to /home/bturner/.m2/repository/org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-SNAPSHOT-sources.jar [INFO] [bundle:install] [INFO] Parsing file:/home/bturner/.m2/repository/repository.xml [INFO] Installing org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-SNAPSHOT.jar [INFO] Writing OBR metadata [INFO] [deploy:deploy] [INFO] Retrieving previous build number from snapshots [INFO] repository metadata for: 'snapshot org.cytoscape:graph-render:1.0-SNAPSHOT' could not be found on repository: snapshots, so will be created Uploading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-20101117.170141-1.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Graph Render/modules/org.cytoscape$graph-render/builds/2010-11-17_12-00-56/archive/org.cytoscape/graph-render/1.0-SNAPSHOT/pom.xml [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Graph Render/modules/org.cytoscape$graph-render/builds/2010-11-17_12-00-56/archive/org.cytoscape/graph-render/1.0-20101117.170141-1/graph-render-1.0-SNAPSHOT.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-javadoc.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Graph Render/modules/org.cytoscape$graph-render/builds/2010-11-17_12-00-56/archive/org.cytoscape/graph-render/1.0-20101117.170141-1/graph-render-1.0-SNAPSHOT-javadoc.jar [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/graph-render-1.0-SNAPSHOT-sources.jar> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Graph Render/modules/org.cytoscape$graph-render/builds/2010-11-17_12-00-56/archive/org.cytoscape/graph-render/1.0-20101117.170141-1/graph-render-1.0-SNAPSHOT-sources.jar [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Error deploying artifact: Failed to transfer file: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/org/cytoscape/graph-render/1.0-SNAPSHOT/graph-render-1.0-20101117.170141-1.jar. Return code is: 500 [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 43 seconds [INFO] Finished at: Wed Nov 17 12:01:41 EST 2010 [INFO] Final Memory: 64M/725M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... Downloading: http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots//org/cytoscape/parent/1.0-SNAPSHOT/parent-1.0-SNAPSHOT.pom [INFO] Unable to find resource 'org.cytoscape:parent:pom:1.0-SNAPSHOT' in repository cytoscape_snapshots (http://cytoscape.wodaklab.org/nexus/content/repositories/snapshots/) WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.graph-render [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20101117010107/sonar-core-maven-plugin-20101117010107.pom 1863/512b 512b downloaded (sonar-core-maven-plugin-20101117010107.pom) Downloading: http://localhost:8021/sonar/deploy/maven/org/codehaus/sonar/runtime/sonar-core-maven-plugin/20101117010107/sonar-core-maven-plugin-20101117010107.jar 0/6K 1/6K 1/6K 2/6K 2/6K 3/6K 4/6K 4/6K 5/6K 5/6K 6/6K 6/6K 7/6K 8/6K 6K downloaded (sonar-core-maven-plugin-20101117010107.jar) [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.graph-render [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 508 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 31 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 737 ms [INFO] Java bytecode scan... [INFO] Java bytecode scan done: 117 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 27 ms [INFO] Squid extraction done: 549 ms [INFO] Sensor SquidSensor done: 1463 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/sonar/findbugs-result.xml> [INFO] Execute Findbugs 1.3.9 done: 8399 ms [INFO] Sensor FindbugsSensor done: 8684 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven2-repository.dev.java.net [INFO] artifact org.codehaus.mojo:cobertura-maven-plugin: checking for updates from maven-repository.dev.java.net [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.graph-render [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/src/main/resources> [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Nothing to compile - all classes are up to date [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 36 files to <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/generated-classes/cobertura> Cobertura: Saved information on 36 classes. Instrument time: 1371ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/src/test/resources> [INFO] [pax:testCompile] [INFO] Nothing to compile - all classes are up to date [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.graph.render.stateful.MeasuredLineCreatorTest Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.238 sec Results : Tests run: 12, Failures: 0, Errors: 0, Skipped: 0 [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 36 classes. Report time: 1497ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 13179 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 268 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 290 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 1685 ms [INFO] Sensor CheckstyleSensor done: 1710 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 3673 ms [INFO] Sensor PmdSensor done: 4167 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 49 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 5 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 37 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 66 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Graph%20Render/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 42 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Wed Nov 17 00:02:32 EST 2010 [INFO] Deleting unprocessed data before Wed Nov 17 00:02:39 EST 2010 [INFO] Database optimization done: 8185 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 47 seconds [INFO] Finished at: Wed Nov 17 12:02:40 EST 2010 [INFO] Final Memory: 71M/770M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
