See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/1350/changes>
Changes: [ruschein] Added new isVirtual(columnName) method to CyTable. [ruschein] Refactored CyTableImpl.VirtualColumn to have its own source file. ------------------------------------------ [...truncated 174 lines...] 6K downloaded (sonar-core-maven-plugin-20110126105207.jar) [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_snapshots [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from cytoscape_biopax_snapshot [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi [INFO] snapshot org.cytoscape:integration-test-support:3.0.0-alpha3-SNAPSHOT: checking for updates from spring-osgi-snapshots [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.model-impl [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 593 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 0 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 929 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/model/internal/tsort/TopologicalSort' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNetworkManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/VirtualColumn' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowSetMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableEntryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopologicalSort' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/AttribTopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyEdgeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/AttribTopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowCreatedMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyEdgeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyRootNetworkFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl$InternalRow' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopologicalSort' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNetworkManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/VirtualColumn' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowSetMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableEntryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/AttribTopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowCreatedMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyEdgeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyRootNetworkFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl$InternalRow' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopologicalSort' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNetworkManagerImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/VirtualColumn' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/ArraySubGraph' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowSetMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableEntryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyNodeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/tsort/TopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/AttribTopoGraphNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableRowUpdateServiceImpl$RowCreatedMicroListenerProxy' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyEdgeImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyRootNetworkFactoryImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableImpl$InternalRow' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/model/internal/CyTableFactoryImpl' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 136 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 28 ms [INFO] Squid extraction done: 555 ms [INFO] Sensor SquidSensor done: 1709 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/sonar/findbugs-result.xml> The following classes needed for analysis were missing: org.cytoscape.model.internal.CyEdgeImpl org.cytoscape.model.internal.tsort.TopologicalSort org.cytoscape.model.internal.CyTableImpl org.cytoscape.model.internal.AttribTopoGraphNode org.cytoscape.model.internal.tsort.TopoGraphNode org.cytoscape.model.internal.ArraySubGraph org.cytoscape.model.internal.CyNodeImpl [INFO] Execute Findbugs 1.3.9 done: 8221 ms [INFO] Sensor FindbugsSensor done: 8550 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.model-impl [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 3 resources [INFO] [pax:compile] [INFO] Compiling 13 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/classes> [INFO] [cobertura:instrument] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Instrumenting 24 files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/generated-classes/cobertura> Cobertura: Saved information on 24 classes. Instrument time: 1339ms [INFO] Instrumentation was successful. [INFO] [resources:testResources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/src/test/resources> [INFO] [pax:testCompile] [INFO] Compiling 14 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/test-classes> [INFO] [surefire:test] [INFO] Surefire report directory: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Running org.cytoscape.model.CyTableManagerTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.282 sec Running org.cytoscape.model.GraphObjectTest Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec Running org.cytoscape.model.TestCyNetworkFactory Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec Running org.cytoscape.model.subnetwork.CySubNetworkCyNetworkTest Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.121 sec Running org.cytoscape.model.IdentifiableTest Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec Running org.cytoscape.model.CyTableTest Tests run: 78, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.198 sec Running org.cytoscape.model.subnetwork.CySubNetworkTest Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.05 sec Running org.cytoscape.model.CyNetworkTest Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.095 sec Running org.cytoscape.model.subnetwork.CySubNetworkCyTableManagerTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec Running org.cytoscape.model.subnetwork.CyRootNetworkCyNetworkTest Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec Running org.cytoscape.model.CyEdgeTest Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 sec Running org.cytoscape.model.CyNodeTest Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 sec Running org.cytoscape.model.internal.tsort.TopologicalSortTest Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec Running org.cytoscape.model.subnetwork.CyRootNetworkTest Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.047 sec Results : Tests run: 246, Failures: 0, Errors: 0, Skipped: 0 [INFO] [cobertura:cobertura] [INFO] Cobertura 1.9.4.1 - GNU GPL License (NO WARRANTY) - See COPYRIGHT file Cobertura: Loaded information on 24 classes. Report time: 1123ms [INFO] Cobertura Report generation was successful. [INFO] Execute maven plugin cobertura-maven-plugin done: 13024 ms [INFO] Sensor CoberturaSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/site/cobertura/coverage.xml> [INFO] Sensor CoberturaSensor done: 441 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 312 ms [INFO] Sensor CheckstyleSensor... [INFO] Execute Checkstyle 5.1... [INFO] Checkstyle configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/sonar/checkstyle.xml> [INFO] Execute Checkstyle 5.1 done: 1386 ms [INFO] Sensor CheckstyleSensor done: 1415 ms [INFO] Sensor PmdSensor... [INFO] Execute PMD 4.2.5... [INFO] Java version: 1.6 [INFO] PMD configuration: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/sonar/pmd.xml> [INFO] PMD output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/sonar/pmd-result.xml> [INFO] Execute PMD 4.2.5 done: 3852 ms [INFO] Sensor PmdSensor done: 4008 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 26 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 6 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 27 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 150 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/impl/target/surefire-reports> [INFO] Sensor SurefireSensor done: 149 ms [INFO] Execute decorators... [INFO] ------------- Analyzing org.cytoscape.model-impl-it [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 70 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 0 ms [INFO] Sensor SquidSensor... [INFO] Sensor SquidSensor done: 0 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/it/target/surefire-reports> [INFO] Sensor SurefireSensor done: 57 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 0 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 50 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 14 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 51 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 490 ms [INFO] Execute decorators... [INFO] ------------- Analyzing model-impl-parent [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 0 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 51 ms [INFO] Sensor SquidSensor... [INFO] Sensor SquidSensor done: 0 ms [INFO] Sensor SurefireSensor... [INFO] parsing <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Model%20impl/ws/trunk/target/surefire-reports> [INFO] Sensor SurefireSensor done: 0 ms [INFO] Sensor CpdSensor... [INFO] Sensor CpdSensor done: 1 ms [INFO] Sensor ProfileSensor... [INFO] Sensor ProfileSensor done: 229 ms [INFO] Sensor ProjectLinksSensor... [INFO] Sensor ProjectLinksSensor done: 11 ms [INFO] Sensor VersionEventsSensor... [INFO] Sensor VersionEventsSensor done: 63 ms [INFO] Sensor Maven dependencies... [INFO] Sensor Maven dependencies done: 75 ms [INFO] Execute decorators... [INFO] ANALYSIS SUCCESSFUL, you can browse http://localhost:8021/sonar [INFO] Database optimization... [INFO] Deleting files data before Wed Jan 26 00:03:27 EST 2011 [INFO] Deleting unprocessed data before Wed Jan 26 00:04:23 EST 2011 [INFO] Database optimization done: 56696 ms [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESSFUL [INFO] ------------------------------------------------------------------------ [INFO] Total time: 2 minutes 2 seconds [INFO] Finished at: Wed Jan 26 12:04:24 EST 2011 [INFO] Final Memory: 82M/709M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
