See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/80/changes>
Changes: [ruschein] Renamed getDataTable() in CyRow to getTable(). ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/search-impl/trunk A osgi.bnd A src A src/test A src/test/java A src/test/resources A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/search A src/main/java/org/cytoscape/search/internal A src/main/java/org/cytoscape/search/internal/SearchTaskFactory.java A src/main/java/org/cytoscape/search/internal/EnhancedSearchQuery.java A src/main/java/org/cytoscape/search/internal/ReindexTask.java A src/main/java/org/cytoscape/search/internal/EnhancedSearchFactory.java A src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java A src/main/java/org/cytoscape/search/internal/IndexAndSearchTask.java A src/main/java/org/cytoscape/search/internal/EnhancedSearchManager.java A src/main/java/org/cytoscape/search/internal/EnhancedSearch.java A src/main/java/org/cytoscape/search/internal/ui A src/main/java/org/cytoscape/search/internal/ui/EnhancedSearchPanel.java A src/main/java/org/cytoscape/search/internal/util A src/main/java/org/cytoscape/search/internal/util/AttributeFields.java A src/main/java/org/cytoscape/search/internal/util/CustomMultiFieldQueryParser.java A src/main/java/org/cytoscape/search/internal/util/EnhancedSearchUtils.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml At revision 23989 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 53945 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.search-impl [org.cytoscape.search] [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [pax:compile] [INFO] Compiling 12 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Search Impl/modules/org.cytoscape$search-impl/builds/2011-02-01_12-16-10/archive/org.cytoscape/search-impl/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/src/main/java/org/cytoscape/search/internal/EnhancedSearchIndex.java>:[107,29] cannot find symbol symbol : method getTable() location: interface org.cytoscape.model.CyRow [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5 seconds [INFO] Finished at: Tue Feb 01 12:16:18 EST 2011 [INFO] Final Memory: 48M/493M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.search-impl [org.cytoscape.search] [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.search-impl [org.cytoscape.search] [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 432 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 26 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 396 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/search/internal/SearchTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/AttributeFields' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchQuery' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ReindexTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/CustomMultiFieldQueryParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IndexAndSearchTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/EnhancedSearchUtils' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearch' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchIndex' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IdentifiersCollector' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/SearchTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/AttributeFields' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchQuery' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ReindexTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/CustomMultiFieldQueryParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IndexAndSearchTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/EnhancedSearchUtils' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearch' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchIndex' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IdentifiersCollector' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/SearchTaskFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/AttributeFields' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchFactory' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchQuery' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ReindexTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchManager' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/CustomMultiFieldQueryParser' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel$2' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IndexAndSearchTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/util/EnhancedSearchUtils' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearch' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/ui/EnhancedSearchPanel' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/EnhancedSearchIndex' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/search/internal/IdentifiersCollector' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 32 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 7 ms [INFO] Squid extraction done: 204 ms [INFO] Sensor SquidSensor done: 678 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/target/sonar/findbugs-result.xml> [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Can not execute Findbugs No classes found to analyze in <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Search%20Impl/ws/trunk/target/classes> */R1/resources/M2_MAVEN/repository/org/cytoscape/model-api/3.0.0-alpha3-SNAPSHOT/model-api-3.0.0-alpha3-SNAPSHOT.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/event-api/3.0.0-alpha3/event-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/viewmodel-api/3.0.0-alpha3/viewmodel-api-3.0.0-alpha3.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/core-task-api/3.0.0-alpha2/core-task-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/work-api/3.0.0-alpha2/work-api-3.0.0-alpha2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/session-api/3.0.0-alpha1/session-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/vizmap-api/3.0.0-alpha1/vizmap-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/presentation-api/3.0.0-alpha1/presentation-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/property-api/3.0.0-alpha1/property-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/wrappers/org.apache.lucene/3.0.2/org.apache.lucene-3.0.2.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/swing-application-api/3.0.0-alpha1/swing-application-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/cytoscape-sun/jhall/1.0/jhall-1.0.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/work-swing-api/3.0.0-alpha1/work-swing-api-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/cytoscape/work-spring-hack/3.0.0-alpha1/work-spring-hack-3.0.0-alpha1.jar */R1/resources/M2_MAVEN/repository/org/ops4j/pax/logging/pax-logging-api/1.5.2/pax-logging-api-1.5.2.jar */tmp/findbugs5728881986229020847.jar */tmp/findbugs3960990934693117234.jar */R1/tools/java/jdk1.6.0_20/jre/lib/resources.jar */R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jsse.jar */R1/tools/java/jdk1.6.0_20/jre/lib/jce.jar */R1/tools/java/jdk1.6.0_20/jre/lib/charsets.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/dnsns.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/localedata.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunjce_provider.jar */R1/tools/java/jdk1.6.0_20/jre/lib/ext/sunpkcs11.jar [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 9 seconds [INFO] Finished at: Tue Feb 01 12:16:39 EST 2011 [INFO] Final Memory: 42M/601M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
