See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/1661/changes>
Changes: [ruschein] Renamed getDataTable() in CyRow to getTable(). ------------------------------------------ Started by an SCM change Checking out http://chianti.ucsd.edu/svn/core3/layout-api/trunk A osgi.bnd A src A src/test A src/test/java A src/test/java/org A src/test/java/org/cytoscape A src/main A src/main/java A src/main/java/org A src/main/java/org/cytoscape A src/main/java/org/cytoscape/view A src/main/java/org/cytoscape/view/layout A src/main/java/org/cytoscape/view/layout/AbstractGraphPartition.java A src/main/java/org/cytoscape/view/layout/CyLayoutAlgorithm.java A src/main/java/org/cytoscape/view/layout/LayoutTask.java A src/main/java/org/cytoscape/view/layout/AbstractLayout.java A src/main/java/org/cytoscape/view/layout/LayoutEdge.java A src/main/java/org/cytoscape/view/layout/EdgeWeighter.java A src/main/java/org/cytoscape/view/layout/LayoutNode.java A src/main/java/org/cytoscape/view/layout/LayoutPartition.java A src/main/java/org/cytoscape/view/layout/CyLayouts.java A src/main/java/org/cytoscape/view/layout/internal A src/main/java/org/cytoscape/view/layout/internal/algorithms A src/main/java/org/cytoscape/view/layout/internal/algorithms/GridNodeLayout.java A src/main/java/org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutTask.java A src/main/java/org/cytoscape/view/layout/internal/CyLayoutsImpl.java A src/main/java/org/cytoscape/view/layout/LayoutAdapter.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring A src/main/resources/META-INF/spring/bundle-context-osgi.xml A src/main/resources/META-INF/spring/bundle-context.xml A pom.xml U . At revision 23989 No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-agent-1.385.jar:/R1/tools/maven/apache-maven-2.1.0/boot/classworlds-1.1.jar hudson.maven.agent.Main /R1/tools/maven/apache-maven-2.1.0 /R1/resources/webservers/tomcat_2/webapps/hudson/WEB-INF/lib/remoting-1.385.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven-interceptor-1.385.jar 60926 /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven2.1-interceptor-1.2.jar <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-api [INFO] task-segment: [deploy] [INFO] ------------------------------------------------------------------------ [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 13 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/target/classes> [INFO] [recovering meta-data] [HUDSON] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 Layout api/modules/org.cytoscape$layout-api/builds/2011-02-01_12-22-17/archive/org.cytoscape/layout-api/3.0.0-alpha2-SNAPSHOT/pom.xml [INFO] ------------------------------------------------------------------------ [ERROR] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Compilation failure <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/src/main/java/org/cytoscape/view/layout/LayoutTask.java>:[66,49] cannot find symbol symbol : method getTable() location: interface org.cytoscape.model.CyRow <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/src/main/java/org/cytoscape/view/layout/EdgeWeighter.java>:[115,28] cannot find symbol symbol : method getTable() location: interface org.cytoscape.model.CyRow [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5 seconds [INFO] Finished at: Tue Feb 01 12:22:25 EST 2011 [INFO] Final Memory: 46M/492M [INFO] ------------------------------------------------------------------------ Sending e-mails to: [email protected] channel stopped [trunk] $ /R1/tools/maven/apache-maven-2.1.0/bin/mvn org.codehaus.sonar:sonar-maven-plugin:1.8:sonar -Dsonar.jdbc.driver=com.mysql.jdbc.Driver -Dsonar.jdbc.username=sonar -Dsonar.jdbc.password=deploysonar -Dsonar.jdbc.url=jdbc:mysql://localhost:3306/sonar -Dsonar.host.url=http://localhost:8021/sonar/ -Dsonar.skipInstall=true [INFO] Scanning for projects... WAGON_VERSION: 1.0-beta-2 [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-api [INFO] task-segment: [org.codehaus.sonar:sonar-maven-plugin:1.8:sonar] (aggregator-style) [INFO] ------------------------------------------------------------------------ [INFO] [sonar:sonar] [INFO] Sonar host: http://localhost:8021/sonar [INFO] Sonar version: 2.4 [INFO] [sonar-core:internal] [INFO] Database dialect class org.sonar.jpa.dialect.MySql [INFO] ------------- Analyzing org.cytoscape.layout-api [INFO] Selected quality profile : [name=Cytoscape,language=java] [INFO] Configure maven plugins... [INFO] Sensor JavaSourceImporter... [INFO] Sensor JavaSourceImporter done: 416 ms [INFO] Sensor AsynchronousMeasuresSensor... [INFO] Sensor AsynchronousMeasuresSensor done: 31 ms [INFO] Sensor SquidSensor... [INFO] Java AST scan... [INFO] Java AST scan done: 468 ms [INFO] Java bytecode scan... [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/CyLayoutsImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutAdapter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/EdgeWeighter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/WeightTypes' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractGraphPartition' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/CyLayoutsImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutAdapter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/EdgeWeighter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/WeightTypes' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractGraphPartition' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/CyLayoutsImpl' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutAdapter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutNode' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutEdge' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/EdgeWeighter' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/internal/algorithms/GridNodeLayoutTask' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition$1' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractLayout' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/WeightTypes' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/AbstractGraphPartition' is not accessible through the ClassLoader. [WARN] Class 'org/cytoscape/view/layout/LayoutPartition' is not accessible through the ClassLoader. [INFO] Java bytecode scan done: 100 ms [INFO] Squid extraction... [INFO] Package design analysis... [INFO] Package design analysis done: 8 ms [INFO] Squid extraction done: 247 ms [INFO] Sensor SquidSensor done: 881 ms [INFO] Sensor FindbugsSensor... [INFO] Execute Findbugs 1.3.9... [INFO] Findbugs output report: <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/target/sonar/findbugs-result.xml> [INFO] Execute Findbugs 1.3.9 done: 2246 ms [INFO] Sensor FindbugsSensor done: 2314 ms [INFO] Execute maven plugin cobertura-maven-plugin... [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.layout-api [INFO] task-segment: [org.codehaus.mojo:cobertura-maven-plugin::cobertura] [INFO] ------------------------------------------------------------------------ [INFO] Preparing cobertura:cobertura [INFO] [resources:resources] [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] Copying 0 resource [INFO] [pax:compile] [INFO] Compiling 11 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20Layout%20api/ws/trunk/target/classes> [INFO] [recovering meta-data] [INFO] ------------------------------------------------------------------------ [ERROR] BUILD ERROR [INFO] ------------------------------------------------------------------------ [INFO] Can not execute Sonar Embedded error: Unable to execute maven plugin Compilation failure [INFO] ------------------------------------------------------------------------ [INFO] For more information, run Maven with the -e switch [INFO] ------------------------------------------------------------------------ [INFO] Total time: 14 seconds [INFO] Finished at: Tue Feb 01 12:22:50 EST 2011 [INFO] Final Memory: 69M/728M [INFO] ------------------------------------------------------------------------ -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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