See <http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/67/>
------------------------------------------ [...truncated 85 lines...] A src/main/java/org/cytoscape/cpath2/internal/util AU src/main/java/org/cytoscape/cpath2/internal/util/BioPaxEntityTypeMap.java AU src/main/java/org/cytoscape/cpath2/internal/util/AttributeUtil.java AU src/main/java/org/cytoscape/cpath2/internal/util/NetworkGroupUtil.java AU src/main/java/org/cytoscape/cpath2/internal/util/NullTaskMonitor.java AU src/main/java/org/cytoscape/cpath2/internal/util/NetworkMergeUtil.java AU src/main/java/org/cytoscape/cpath2/internal/util/NetworkUtil.java AU src/main/java/org/cytoscape/cpath2/internal/util/SelectUtil.java A src/main/java/org/cytoscape/cpath2/internal/web_service AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebServiceImpl.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathProtocol.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebServiceListener.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathResponseFormat.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CytoscapeCPathWebService.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/EmptySetException.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathProperties.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathException.java AU src/main/java/org/cytoscape/cpath2/internal/web_service/CPathWebService.java A src/main/java/org/cytoscape/cpath2/internal/plugin AU src/main/java/org/cytoscape/cpath2/internal/plugin/CPathPlugIn2.java A src/main/resources A src/main/resources/META-INF A src/main/resources/META-INF/spring AU src/main/resources/META-INF/spring/bundle-context-osgi.xml AU src/main/resources/META-INF/spring/bundle-context.xml A src/main/resources/org A src/main/resources/org/cytoscape A src/main/resources/org/cytoscape/cpath2 A src/main/resources/org/cytoscape/cpath2/internal A src/main/resources/org/cytoscape/cpath2/internal/view A src/main/resources/org/cytoscape/cpath2/internal/view/resources AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/arrow_collapsed.gif AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/stock_autofilter.png AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/pc.png AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/run_tool.gif AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/arrow_expanded.gif AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/stock_toggle-graphics-16.png AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/question.png AU src/main/resources/org/cytoscape/cpath2/internal/view/resources/stock_zoom-16.png A src/main/resources/org/cytoscape/cpath2/internal/plugin A src/main/resources/org/cytoscape/cpath2/internal/plugin/plugin.props A src/main/resources/xsd AU src/main/resources/xsd/SearchResponse.xsd AU src/main/resources/xsd/RecordBase.xsd AU src/main/resources/xsd/SummaryResponse.xsd AU pom.xml At revision 24884 no change for http://chianti.ucsd.edu/svn/core3/cpath2-impl/trunk since the previous build Found mavenVersion 3.0.3 from file jar:file:/R1/tools/maven/apache-maven-3.0.3/lib/maven-core-3.0.3.jar!/META-INF/maven/org.apache.maven/maven-core/pom.properties No emails were triggered. Parsing POMs [trunk] $ java -cp /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.401.jar:/R1/tools/maven/apache-maven-3.0.3/boot/plexus-classworlds-2.4.jar org.jvnet.hudson.maven3.agent.Maven3Main /R1/tools/maven/apache-maven-3.0.3 /R1/resources/webservers/tomcat_2/webapps/jenkins/WEB-INF/lib/remoting-1.401.jar /R1/resources/webapps/cytoscape_build_sys/hudson_home/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.401.jar 47631 <===[HUDSON REMOTING CAPACITY]===> channel started Executing Maven: -B -f <http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/pom.xml> deploy [INFO] Scanning for projects... [WARNING] [WARNING] Some problems were encountered while building the effective model for org.cytoscape:cpath2-impl:bundle:1.0-SNAPSHOT [WARNING] 'build.plugins.plugin.version' for org.jvnet.jaxb2.maven2:maven-jaxb2-plugin is missing. @ line 120, column 12 [WARNING] The expression ${pom.version} is deprecated. Please use ${project.version} instead. [WARNING] [WARNING] It is highly recommended to fix these problems because they threaten the stability of your build. [WARNING] [WARNING] For this reason, future Maven versions might no longer support building such malformed projects. [WARNING] [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building org.cytoscape.cpath2-impl [org.cytoscape.cpath2] 1.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-jaxb2-plugin:0.7.5:generate (SearchResponse) @ cpath2-impl --- [INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.5:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.7.5:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, backport-util-concurrent:backport-util-concurrent:jar:3.1:compile, org.codehaus.plexus:plexus-interpolation:jar:1.11:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.7.5:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.2:compile, javax.xml.bind:jaxb-api:jar:2.2.2:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.2:compile] [INFO] specVersion:2.1 [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[SearchResponse.xsd] [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.cpath2.internal.schemas.search_response [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd/SearchResponse.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/BasicRecordType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/DataSourceType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/ErrorType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/ExtendedRecordType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/ObjectFactory.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/OrganismType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/PathwayListType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/PathwayType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/SearchResponseType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/search_response/XRefType.java [INFO] Finished execution. [INFO] [INFO] --- maven-jaxb2-plugin:0.7.5:generate (SummaryResponse) @ cpath2-impl ---[INFO] Started execution. [INFO] JAXB API is loaded from the [jar:file:/R1/tools/java/jdk1.6.0_20/jre/lib/rt.jar!]. [INFO] Detected JAXB API version [2.1]. [INFO] pluginArtifacts:[org.jvnet.jaxb2.maven2:maven-jaxb2-plugin:maven-plugin:0.7.5:, org.jvnet.jaxb2.maven2:maven-jaxb2-plugin-core:jar:0.7.5:compile, com.sun.org.apache.xml.internal:resolver:jar:20050927:compile, backport-util-concurrent:backport-util-concurrent:jar:3.1:compile, org.codehaus.plexus:plexus-interpolation:jar:1.11:compile, org.codehaus.plexus:plexus-utils:jar:1.5.15:compile, junit:junit:jar:4.8.1:compile, org.jfrog.maven.annomojo:maven-plugin-anno:jar:1.3.1:compile, org.jvnet.jaxb2.maven2:maven-jaxb22-plugin:jar:0.7.5:compile, com.sun.xml.bind:jaxb-impl:jar:2.2.2:compile, javax.xml.bind:jaxb-api:jar:2.2.2:compile, javax.xml.stream:stax-api:jar:1.0-2:compile, javax.activation:activation:jar:1.1:compile, com.sun.xml.bind:jaxb-xjc:jar:2.2.2:compile] [INFO] specVersion:2.1 [INFO] schemaLanguage:null [INFO] schemaDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd> [INFO] schemaIncludes:[SummaryResponse.xsd] [INFO] schemaExcludes:null [INFO] bindingDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd> [INFO] bindingIncludes:[*.xjb] [INFO] bindingExcludes:null [INFO] disableDefaultExcludes:false [INFO] catalog:null [INFO] catalogResolver:com.sun.org.apache.xml.internal.resolver.tools.CatalogResolver [INFO] generatePackage:org.cytoscape.cpath2.internal.schemas.summary_response [INFO] generateDirectory:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc> [INFO] readOnly:false [INFO] extension:false [INFO] strict:true [INFO] writeCode:true [INFO] verbose:true [INFO] debug:false [INFO] args:[] [INFO] forceRegenerate:true [INFO] removeOldOutput:false [INFO] produces:[**/*.*, **/*.java, **/bgm.ser, **/jaxb.properties] [INFO] otherDepends:null [INFO] episodeFile:<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc/META-INF/sun-jaxb.episode> [INFO] episode:true [INFO] classpathElements:[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/classes]> [INFO] plugins:null [INFO] episodes:null [INFO] xjcPlugins:null [INFO] episodes:null [INFO] schemaFiles (calculated):[<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/src/main/resources/xsd/SummaryResponse.xsd]> [INFO] bindingFiles (calculated):[] [INFO] xjcPluginArtifacts (resolved):[] [INFO] xjcPluginFiles (resolved):[] [INFO] xjcPluginURLs (resolved):[] [INFO] episodeArtifacts (resolved):[] [INFO] episodeFiles (resolved):[] Using java.util.ServiceLoader [INFO] Parsing input schema(s)... [INFO] Compiling input schema(s)... [INFO] Writing output to [<http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/generated-sources/xjc].> [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/BasicRecordType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/DataSourceType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/ErrorType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/ExtendedRecordType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/ObjectFactory.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/OrganismType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/PathwayListType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/PathwayType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/SummaryResponseType.java [INFO] XJC writing: org/cytoscape/cpath2/internal/schemas/summary_response/XRefType.java [INFO] Finished execution. [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ cpath2-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 14 resources [INFO] Copying 1 resource [INFO] Copying 1 resource [INFO] [INFO] --- maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) @ cpath2-impl --- [INFO] Compiling 94 source files to <http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/target/classes> [INFO] [recovering meta-data] mojoFailed org.ops4j:maven-pax-plugin:1.5-SNAPSHOT(default-compile) projectFailed org.cytoscape:cpath2-impl:1.0-SNAPSHOT [JENKINS] Archiving <http://cytoscape.wodaklab.org/hudson/job/Cy3%20cpath2-impl/ws/trunk/pom.xml> to /R1/resources/webapps/cytoscape_build_sys/hudson_home/jobs/Cy3 cpath2-impl/modules/org.cytoscape$cpath2-impl/builds/2011-05-01_20-04-13/archive/org.cytoscape/cpath2-impl/1.0-SNAPSHOT/pom.xml sessionEnded [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5.654s [INFO] Finished at: Sun May 01 20:04:22 EDT 2011 [INFO] Final Memory: 21M/219M [INFO] ------------------------------------------------------------------------ maven builder waiting mavenExecutionResult exceptions not empty org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.ops4j:maven-pax-plugin:1.5-SNAPSHOT:compile (default-compile) on project cpath2-impl: Compilation failure at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59) at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:319) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156) at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239) at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:146) at hudson.maven.Maven3Builder.call(Maven3Builder.java:124) at hudson.maven.Maven3Builder.call(Maven3Builder.java:71) at hudson.remoting.UserRequest.perform(UserRequest.java:114) at hudson.remoting.UserRequest.perform(UserRequest.java:48) at hudson.remoting.Request$2.run(Request.java:270) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:619) Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:516) at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:114) at org.ops4j.pax.construct.lifecycle.BundleCompilerMojo.execute(BundleCompilerMojo.java:74) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209) ... 27 more Sending e-mails to: [email protected] channel stopped Skipping sonar analysis due to timer build trigger -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. 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