Author: mes
Date: 2011-07-06 09:22:54 -0700 (Wed, 06 Jul 2011)
New Revision: 26061
Modified:
core3/io-impl/trunk/pom.xml
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManager.java
Log:
fixed compile issues
Modified: core3/io-impl/trunk/pom.xml
===================================================================
--- core3/io-impl/trunk/pom.xml 2011-07-06 16:19:30 UTC (rev 26060)
+++ core3/io-impl/trunk/pom.xml 2011-07-06 16:22:54 UTC (rev 26061)
@@ -150,12 +150,6 @@
<artifactId>property-api</artifactId>
<version>3.0.0-alpha4</version>
</dependency>
- <dependency>
- <groupId>org.cytoscape</groupId>
- <artifactId>default-mappings</artifactId>
- <version>3.0.0-alpha4-SNAPSHOT</version>
- </dependency>
-
<!-- 3rd party libraries -->
<!-- <dependency>
<groupId>com.itextpdf</groupId>
Modified:
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java
===================================================================
---
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java
2011-07-06 16:19:30 UTC (rev 26060)
+++
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/read/GenericReaderManager.java
2011-07-06 16:22:54 UTC (rev 26061)
@@ -64,7 +64,7 @@
*/
public R getReader(URI uri, String inputName) {
- logger.debug("Number of factories: " + factories.size());
+ logger.debug("Number of tunableHandlerFactories: " +
factories.size());
for (T factory : factories) {
final CyFileFilter cff = factory.getCyFileFilter();
Modified:
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManager.java
===================================================================
---
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManager.java
2011-07-06 16:19:30 UTC (rev 26060)
+++
core3/io-impl/trunk/src/main/java/org/cytoscape/io/internal/util/UnrecognizedVisualPropertyManager.java
2011-07-06 16:22:54 UTC (rev 26061)
@@ -2,7 +2,7 @@
import java.util.HashMap;
import java.util.Map;
-import java.util.Set;
+import java.util.Collection;
import org.cytoscape.model.CyEdge;
import org.cytoscape.model.CyNode;
@@ -64,7 +64,7 @@
rendererTbl = rendererTablesMap.get(netView.getSUID());
}
- Set<CyRow> rendererRows =
rendererTbl.getMatchingRows("att_name", attName);
+ Collection<CyRow> rendererRows =
rendererTbl.getMatchingRows("att_name", attName);
String targetType = getTargetType(view);
Long rendererId = null;
@@ -111,7 +111,7 @@
if (rendererTbl != null && vpTbl != null) {
String targetType = getTargetType(view);
- Set<CyRow> rows = vpTbl.getMatchingRows("target_id",
view.getSUID());
+ Collection<CyRow> rows =
vpTbl.getMatchingRows("target_id", view.getSUID());
for (CyRow r : rows) {
// also make sure the target type is the same
--
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