Author: pwang
Date: 2011-10-18 10:15:29 -0700 (Tue, 18 Oct 2011)
New Revision: 27214
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/ZStatistics.java
Log:
Refactored
Modified:
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/ZStatistics.java
===================================================================
---
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/ZStatistics.java
2011-10-18 15:50:58 UTC (rev 27213)
+++
csplugins/trunk/ucsd/pwang/jActiveModules31/src/main/java/csplugins/jActiveModules/ZStatistics.java
2011-10-18 17:15:29 UTC (rev 27214)
@@ -4,8 +4,9 @@
//imported packages
import java.io.Serializable;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
-import cytoscape.logger.CyLogger;
/**
* This code was mostly appropriated from the activeModules C++
@@ -19,6 +20,7 @@
private double [][] zs;
private int maxRank, hthsMax, tthsMax, onesMax;
private int hthsMaxInd, tthsMaxInd, onesMaxInd;
+ private static final Logger logger =
LoggerFactory.getLogger(ZStatistics.class);
public ZStatistics(int rank){
//this(rank, 10,50,150);
@@ -115,7 +117,7 @@
throw new RuntimeException("z-score ("+zScore+") produced an
f_index (" + f_index +
") less than zero.");
if(f_index > onesMaxInd) {
- CyLogger.getLogger(ZStatistics.class).warn("The extremely large
z-score (" + zScore + ") generated an f_index ("+
+ logger.warn("The extremely large z-score (" + zScore + ") generated
an f_index ("+
f_index+") that is too large, so using
onesMaxInd instead: " + onesMaxInd );
f_index = onesMaxInd;
}
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