See <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$biopax-impl/1124/changes>
Changes: [rodche] Fixed wrong TaskManager issue; Fixed Reactome links (but the ExternalLink* staff requires re-writing from scratch, using Miriam library to resolve xrefs to URLs); added an experimental hack that helps in some cases skip additional normalization of BioPAX data from pathwaycommons.org ------------------------------------------ [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Cytoscape BioPAX Impl (biopax-impl) 3.0.0-alpha9-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ biopax-impl --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 13 resources [INFO] [INFO] --- maven-compiler-plugin:2.3.2:compile (default-compile) @ biopax-impl --- [INFO] Compiling 25 source files to <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$biopax-impl/ws/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$biopax-impl/ws/src/main/java/org/cytoscape/biopax/internal/BioPaxReaderTask.java>:[97,13] cannot find symbol symbol : method inferPropertiesFromParent(org.biopax.paxtools.model.Model,java.util.HashSet<java.lang.String>) location: class org.biopax.paxtools.controller.ModelUtils [INFO] 1 error [INFO] ------------------------------------------------------------- [JENKINS] Archiving <http://code.cytoscape.org/jenkins/job/Cytoscape%203%20Implementation/org.cytoscape$biopax-impl/ws/pom.xml> to /opt/tomcat-home/jenkins/jobs/Cytoscape 3 Implementation/modules/org.cytoscape$biopax-impl/builds/2012-06-14_19-04-26/archive/org.cytoscape/biopax-impl/3.0.0-alpha9-SNAPSHOT/biopax-impl-3.0.0-alpha9-SNAPSHOT.pom -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/cytoscape-cvs?hl=en.
