Author: paperwing
Date: 2012-07-25 07:30:55 -0700 (Wed, 25 Jul 2012)
New Revision: 29983
Added:
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDisableException.java
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/SimpleAppOld.java
Log:
Missing files from r29978
Added:
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDisableException.java
===================================================================
---
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDisableException.java
(rev 0)
+++
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/exception/AppDisableException.java
2012-07-25 14:30:55 UTC (rev 29983)
@@ -0,0 +1,17 @@
+package org.cytoscape.app.internal.exception;
+
+/**
+ * An exception thrown signal errors found while attempting to disable (still
available after restart) an app.
+ */
+public class AppDisableException extends Exception {
+
+ private static final long serialVersionUID = -8480215944949869131L;
+
+ public AppDisableException(String message) {
+ super(message);
+ }
+
+ public AppDisableException(String message, Throwable cause) {
+ super(message, cause);
+ }
+}
\ No newline at end of file
Added:
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
===================================================================
---
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
(rev 0)
+++
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/BundleApp.java
2012-07-25 14:30:55 UTC (rev 29983)
@@ -0,0 +1,38 @@
+package org.cytoscape.app.internal.manager;
+
+import java.io.File;
+import java.io.IOException;
+import java.util.LinkedList;
+
+import org.apache.commons.io.FileUtils;
+import org.cytoscape.app.internal.exception.AppDisableException;
+import org.cytoscape.app.internal.exception.AppInstallException;
+import org.cytoscape.app.internal.exception.AppInstanceException;
+import org.cytoscape.app.internal.exception.AppUninstallException;
+import org.cytoscape.app.internal.manager.App.AppStatus;
+import org.cytoscape.app.swing.CySwingAppAdapter;
+
+public class BundleApp extends App {
+
+ @Override
+ public Object createAppInstance(CySwingAppAdapter appAdapter)
+ throws AppInstanceException {
+ return null;
+ }
+
+ @Override
+ public void install(AppManager appManager) throws AppInstallException {
+ this.setStatus(AppStatus.INSTALLED);
+ }
+
+ @Override
+ public void uninstall(AppManager appManager) throws
AppUninstallException {
+ this.setStatus(AppStatus.UNINSTALLED);
+ }
+
+ @Override
+ public void disable(AppManager appManager) throws AppDisableException {
+ this.setStatus(AppStatus.DISABLED);
+ }
+
+}
Added:
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/SimpleAppOld.java
===================================================================
---
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/SimpleAppOld.java
(rev 0)
+++
core3/impl/trunk/app-impl/src/main/java/org/cytoscape/app/internal/manager/SimpleAppOld.java
2012-07-25 14:30:55 UTC (rev 29983)
@@ -0,0 +1,139 @@
+package org.cytoscape.app.internal.manager;
+
+import java.io.File;
+import java.lang.reflect.Constructor;
+import java.lang.reflect.InvocationTargetException;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.net.URLClassLoader;
+import java.util.regex.Pattern;
+
+import org.cytoscape.app.CyAppAdapter;
+import org.cytoscape.app.internal.exception.AppDisableException;
+import org.cytoscape.app.internal.exception.AppInstallException;
+import org.cytoscape.app.internal.exception.AppInstanceException;
+import org.cytoscape.app.internal.exception.AppUninstallException;
+import org.cytoscape.app.swing.CySwingAppAdapter;
+
+public class SimpleAppOld extends App {
+ /**
+ * The name of the key in the app jar's manifest file that indicates
the fully-qualified name
+ * of the class to instantiate upon app installation.
+ * */
+ public static final String APP_CLASS_TAG = "Cytoscape-App";
+
+ /**
+ * The name of the key in the app jar's manifest file indicating the
human-readable
+ * name of the app
+ */
+ public static final String APP_READABLE_NAME_TAG = "Cytoscape-App-Name";
+
+ /**
+ * The name of the key in the app jar's manifest file indicating the
version of the app
+ * in the format major.minor.patch[-tag], eg. 3.0.0-SNAPSHOT or 1.2.3
+ */
+ public static final String APP_VERSION_TAG = "Cytoscape-App-Version";
+
+ /**
+ * The name of the key in the app jar's manifest file indicating the
major versions of
+ * Cytoscape that the app is known to be compatible with in
comma-delimited form
+ */
+ public static final String APP_COMPATIBLE_TAG =
"Cytoscape-API-Compatibility";
+
+ /**
+ * A regular expression representing valid app versions, which are in
the format major.minor[.patch][-tag],
+ * eg. 3.0.0-SNAPSHOT, or 3.0.
+ */
+ public static final Pattern APP_VERSION_TAG_REGEX =
Pattern.compile("(0|([1-9]+\\d*))\\.(\\d)+(\\.(\\d)+)?(-.*)?");
+
+ @Override
+ public Object createAppInstance(CySwingAppAdapter appAdapter) throws
AppInstanceException {
+
+ File installFile = this.getAppTemporaryInstallFile();
+ URL appURL = null;
+ try {
+ appURL = installFile.toURI().toURL();
+ } catch (MalformedURLException e) {
+ throw new AppInstanceException("Unable to obtain URL
for file: "
+ + installFile + ". Reason: " +
e.getMessage());
+ }
+
+ // TODO: Currently uses the CyAppAdapter's loader to load apps'
classes. Is there reason to use a different one?
+ ClassLoader appClassLoader = new URLClassLoader(
+ new URL[]{appURL},
appAdapter.getClass().getClassLoader());
+
+ // Attempt to load the class
+ Class<?> appEntryClass = null;
+ try {
+ appEntryClass =
appClassLoader.loadClass(this.getEntryClassName());
+ } catch (ClassNotFoundException e) {
+
+ throw new AppInstanceException("Class " +
this.getEntryClassName() + " not found in URL: " + appURL);
+ }
+
+ // Attempt to obtain the constructor
+ Constructor<?> constructor = null;
+ try {
+ try {
+ constructor =
appEntryClass.getConstructor(CyAppAdapter.class);
+ } catch (SecurityException e) {
+ throw new AppInstanceException("Access to the
constructor for " + appEntryClass + " denied.");
+ } catch (NoSuchMethodException e) {
+ throw new AppInstanceException("Unable to find
a constructor for " + appEntryClass
+ + " that takes a CyAppAdapter
as its argument.");
+ }
+ } catch (AppInstanceException e) {
+ try {
+ constructor =
appEntryClass.getConstructor(CySwingAppAdapter.class);
+ } catch (SecurityException e2) {
+ throw new AppInstanceException("Access to the
constructor for " + appEntryClass
+ + " taking a CySwingAppAdapter
as its argument denied.");
+ } catch (NoSuchMethodException e2) {
+ throw new AppInstanceException("Unable to find
an accessible constructor that takes either"
+ + " a CyAppAdapter or a
CySwingAppAdapter as its argument.");
+ }
+ }
+
+ // Attempt to instantiate the app's class that extends
AbstractCyApp or AbstractCySwingApp.
+ Object appInstance = null;
+ try {
+ appInstance = constructor.newInstance(appAdapter);
+ } catch (IllegalArgumentException e) {
+ throw new AppInstanceException("Illegal arguments
passed to the constructor for the app's entry class: " + e.getMessage());
+ } catch (InstantiationException e) {
+ throw new AppInstanceException("Error instantiating the
class " + appEntryClass + ": " + e.getMessage());
+ } catch (IllegalAccessException e) {
+ throw new AppInstanceException("Access to constructor
denied: " + e.getMessage());
+ } catch (InvocationTargetException e) {
+ e.printStackTrace();
+ throw new AppInstanceException("App constructor threw
exception: " + e.toString());
+ }
+
+ return appInstance;
+ }
+
+ @Override
+ public void install(AppManager appManager) throws AppInstallException {
+ // Use the default installation method of copying over the file,
+ // creating an instance, and registering with the app manager.
+ defaultInstall(appManager);
+ }
+
+ @Override
+ public void uninstall(AppManager appManager) throws
AppUninstallException {
+
+ // Use the default uninstallation procedure which is to move
the app to
+ // the uninstalled apps directory
+ defaultUninstall(appManager);
+
+ // Simple apps require a Cytoscape restart to be uninstalled
+ setStatus(AppStatus.TO_BE_UNINSTALLED);
+ }
+
+ @Override
+ public void disable(AppManager appManager) throws AppDisableException {
+ // TODO Auto-generated method stub
+
+ }
+
+}
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