Branch: refs/heads/CYTOSCAPE-12799
Home: https://github.com/cytoscape/cytoscape-impl
Commit: cf5c921ab19dc1ddbc5fc3574bc0faa35bdb39ac
https://github.com/cytoscape/cytoscape-impl/commit/cf5c921ab19dc1ddbc5fc3574bc0faa35bdb39ac
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-15 (Mon, 15 Mar 2021)
Changed paths:
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/FormulaBuilderDialog.java
Log Message:
-----------
Remove FormulaBuilderDialog.
Commit: b36289367dbeb1512178d0414057848ed77cc028
https://github.com/cytoscape/cytoscape-impl/commit/b36289367dbeb1512178d0414057848ed77cc028
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-15 (Mon, 15 Mar 2021)
Changed paths:
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
Log Message:
-----------
Show SUID attribute in equation editor.
Commit: bebb7a66ee72afaa02b4f172ce30b10618b3c348
https://github.com/cytoscape/cytoscape-impl/commit/bebb7a66ee72afaa02b4f172ce30b10618b3c348
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-15 (Mon, 15 Mar 2021)
Changed paths:
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
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equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ACos.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ASin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Abs.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Combin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Count.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/IList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Left.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Not.java
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equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Now.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Pi.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Product.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Right.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Round.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/SList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/StDev.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Today.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Value.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
Log Message:
-----------
Improve equation documentation. Minor refactoring.
Commit: 9353862e92c61624a09b08fd14848a6369270e6b
https://github.com/cytoscape/cytoscape-impl/commit/9353862e92c61624a09b08fd14848a6369270e6b
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-15 (Mon, 15 Mar 2021)
Changed paths:
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ACos.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ASin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Abs.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Combin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Count.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/IList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Left.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Not.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Now.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Pi.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Product.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Right.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Round.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/SList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/StDev.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Today.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Value.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/FormulaBuilderDialog.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
Log Message:
-----------
Merge branch 'feature/equation_cleanup' into develop
Commit: 888a85418f65f8a6dfc71daee6bae8300c3391bb
https://github.com/cytoscape/cytoscape-impl/commit/888a85418f65f8a6dfc71daee6bae8300c3391bb
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2021-03-16 (Tue, 16 Mar 2021)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/command/HelpGenerator.java
Log Message:
-----------
Truncate really long arguments. Fixes CYTOSCAPE-12802
Commit: 80ebdfbfaf1188e21f164f5a8a97cb98cd461dbe
https://github.com/cytoscape/cytoscape-impl/commit/80ebdfbfaf1188e21f164f5a8a97cb98cd461dbe
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2021-03-16 (Tue, 16 Mar 2021)
Changed paths:
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ACos.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ASin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Abs.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Combin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Count.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/IList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Left.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Not.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Now.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Pi.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Product.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Right.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Round.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/SList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/StDev.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Today.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Value.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/FormulaBuilderDialog.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
Log Message:
-----------
Merge branch 'develop' of github.com:cytoscape/cytoscape-impl into develop
Commit: aee55c18aebf270f6cb92627501000531b8b37c3
https://github.com/cytoscape/cytoscape-impl/commit/aee55c18aebf270f6cb92627501000531b8b37c3
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2021-03-16 (Tue, 16 Mar 2021)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DLabelSelection.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/NodeLabelChangeEdit.java
Log Message:
-----------
Support multiple selection of labels
Commit: d73e56c3380e0407580f2437cfb1885263e4c877
https://github.com/cytoscape/cytoscape-impl/commit/d73e56c3380e0407580f2437cfb1885263e4c877
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-17 (Wed, 17 Mar 2021)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/DLabelSelection.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/InputHandlerGlassPane.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/undo/NodeLabelChangeEdit.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ACos.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/ASin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Abs.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Combin.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Concatenate.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Count.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/IList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Left.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/NormDist.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Not.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Now.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Pi.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Product.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Right.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Round.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/SList.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/StDev.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Today.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/builtins/Value.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/command/HelpGenerator.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/FormulaBuilderDialog.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/EquationEditorPanel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/equation/TutorialItems.java
Log Message:
-----------
Merge remote-tracking branch 'origin/develop' into CYTOSCAPE-12799
Commit: 520d1821d066715b8e122fb0a1b705453438f263
https://github.com/cytoscape/cytoscape-impl/commit/520d1821d066715b8e122fb0a1b705453438f263
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-17 (Wed, 17 Mar 2021)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/filter/TransformerJsonTunable.java
Log Message:
-----------
Start report transformer validation failure
Commit: 74ebff004a06d324e6fcfd345991b24fb9345c4a
https://github.com/cytoscape/cytoscape-impl/commit/74ebff004a06d324e6fcfd345991b24fb9345c4a
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-17 (Wed, 17 Mar 2021)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/manager/AppManager.java
M
app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpdFactoryImpl.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java
Log Message:
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Iteration on CYTOSCAPE-12793
Move app and equation log messages to debug level
Commit: 6bca548fb557a498594ac06bbbee171af341a00e
https://github.com/cytoscape/cytoscape-impl/commit/6bca548fb557a498594ac06bbbee171af341a00e
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-17 (Wed, 17 Mar 2021)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/tools/GeneralOptionsControl.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/tools/RowHeightControl.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableCellRenderer.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableModel.java
Log Message:
-----------
Implements the visual property TABLE_ROW_HEIGHT and changes how ROW_HEIGHT
works.
Replaces the RowHeightControl's button "auto" with "reset".
Commit: ea5c7e8b8c09c3108a2a54748d9ad1df9b9413f5
https://github.com/cytoscape/cytoscape-impl/commit/ea5c7e8b8c09c3108a2a54748d9ad1df9b9413f5
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-17 (Wed, 17 Mar 2021)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/CyActivator.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ColorColumnTestTask.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ColorColumnTestTaskFactory.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/CyActivator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/TableRenderingEngineImpl.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
M
table-presentation-impl/src/test/java/org/cytoscape/view/table/BrowserTableColumnModelTest.java
M
table-presentation-impl/src/test/java/org/cytoscape/view/table/BrowserTableTest.java
Log Message:
-----------
Minor code refactoring and cleanup.
Commit: db46999b903649c614eba76b29776fcfc8bf9e12
https://github.com/cytoscape/cytoscape-impl/commit/db46999b903649c614eba76b29776fcfc8bf9e12
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-18 (Thu, 18 Mar 2021)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/CyActivator.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/HideColumnTask.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/HideColumnTaskFactory.java
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTask.java
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTaskFactory.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableBrowserMediator.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableRenderer.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
Log Message:
-----------
Adds context-menu item "Toggle Text Wrap" to String columns.
Commit: 1d6aa98d628cb49e81c834bff31040cf226a0f8f
https://github.com/cytoscape/cytoscape-impl/commit/1d6aa98d628cb49e81c834bff31040cf226a0f8f
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-18 (Thu, 18 Mar 2021)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/CyActivator.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTask.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTaskFactory.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableBrowserMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/util/StaticTaskFactoryProvisioner.java
Log Message:
-----------
Using Togglable and TogglableTableColumn in the "Wrap Text" feature -
CYTOSCAPE-12804
Commit: ca5b834c1585c65ea3276e44c01bd8fc7b0506b9
https://github.com/cytoscape/cytoscape-impl/commit/ca5b834c1585c65ea3276e44c01bd8fc7b0506b9
Author: Scooter Morris <scoo...@cgl.ucsf.edu>
Date: 2021-03-19 (Fri, 19 Mar 2021)
Changed paths:
M
swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferencesDialog.java
Log Message:
-----------
Sort the preference categories
Commit: f1ce44b75a196e6d56825733b6379bff4d2ac556
https://github.com/cytoscape/cytoscape-impl/commit/f1ce44b75a196e6d56825733b6379bff4d2ac556
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-19 (Fri, 19 Mar 2021)
Changed paths:
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
Log Message:
-----------
CYTOSCAPE-12800 Add "Auto" page size in the network PDF export dialog.
Commit: 3cf5a7c140051d9dc0f9b972f15c2ff9b6f3706c
https://github.com/cytoscape/cytoscape-impl/commit/3cf5a7c140051d9dc0f9b972f15c2ff9b6f3706c
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-19 (Fri, 19 Mar 2021)
Changed paths:
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableModel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
Log Message:
-----------
Implements the Visual Property ROW_SELECTED.
Commit: 5cd09fcfb59ee6fe784bc4acf881218d676f0bc8
https://github.com/cytoscape/cytoscape-impl/commit/5cd09fcfb59ee6fe784bc4acf881218d676f0bc8
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-19 (Fri, 19 Mar 2021)
Changed paths:
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableRenderer.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableCellRenderer.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTablePresentation.java
Log Message:
-----------
Minor fixes and code refactoring.
Commit: 10412d475557805e8ae5b215dd10c28350545dbf
https://github.com/cytoscape/cytoscape-impl/commit/10412d475557805e8ae5b215dd10c28350545dbf
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-24 (Wed, 24 Mar 2021)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/DynamicTaskFactoryProvisionerImpl.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTaskFactory.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
R
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/util/StaticTaskFactoryProvisioner.java
Log Message:
-----------
DynamicTaskFactoryProvisionerImpl can now create wrapper task factories that
implement Togglable and call the proper isOn() method dynamically. Table's
StaticTaskFactoryProvisioner removed (using the improved
DynamicTaskFactoryProvisioner service instead) - CYTOSCAPE-12804
Commit: 7cbad35dd4c1086d8f21a12169c87f3d97633fbb
https://github.com/cytoscape/cytoscape-impl/commit/7cbad35dd4c1086d8f21a12169c87f3d97633fbb
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-24 (Wed, 24 Mar 2021)
Changed paths:
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/CyActivator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
Log Message:
-----------
Table Browser's column popup menu can now handle the standard MENU_GRAVITY,
INSERT_SEPARATOR and SMALL_ICON_ID service properties. It also removes
duplicated separators. Icons added to menu items "Hide", "Delete" and "Rename"
[Column].
Commit: 2248e781c54d1db563fd310e55353f0b041deb80
https://github.com/cytoscape/cytoscape-impl/commit/2248e781c54d1db563fd310e55353f0b041deb80
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-24 (Wed, 24 Mar 2021)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/AbstractHideFromSelectionTaskFactory.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/AbstractUnHideTaskFactory.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectUtils.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ViewUtils.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStylePanel.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JPanelTunableMutator.java
Log Message:
-----------
Minor code refactoring.
Commit: 9f97e7580d8af10409661229acacba8f2a5c1b6b
https://github.com/cytoscape/cytoscape-impl/commit/9f97e7580d8af10409661229acacba8f2a5c1b6b
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
A
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SuidSearchUtil.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
Log Message:
-----------
CYTOSCAPE-12809 DEGREE (and others) no longer depend on current network.
Commit: 1a33b5f8517f45e2b7b29a8a348ee7c7d7f4fe5a
https://github.com/cytoscape/cytoscape-impl/commit/1a33b5f8517f45e2b7b29a8a348ee7c7d7f4fe5a
Author: Mike Kucera <mikekuc...@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java
Log Message:
-----------
Avoid NPE when loading session.
Commit: ad9eae009c4e957a2dc1c6deeceb2f3d968425e7
https://github.com/cytoscape/cytoscape-impl/commit/ad9eae009c4e957a2dc1c6deeceb2f3d968425e7
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/PopupMenuHelper.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/StaticTaskFactoryProvisioner.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTaskFactory.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTogglableTaskFactory.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/TaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
Log Message:
-----------
The context menus for the Network tab and the View container now support the
Togglable interface - CYTOSCAPE-12804
Removes duplicated separators from those popup menus.
Top level menu items on View's context menu now disabled when empty.
Commit: bfa7a723b4a5b24b85e40a7417481818248dae0e
https://github.com/cytoscape/cytoscape-impl/commit/bfa7a723b4a5b24b85e40a7417481818248dae0e
Author: Christian Lopes <chrtan...@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NamedTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/PopupMenuHelper.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/TaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
Log Message:
-----------
Code refactoring and cleanup.
Commit: c22a7525ad631082f588a62bdf41615ad69ef5be
https://github.com/cytoscape/cytoscape-impl/commit/c22a7525ad631082f588a62bdf41615ad69ef5be
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTask.java
Log Message:
-----------
Add escape characters to App JSON fields while respecting NULL values
Commit: 50c4e9f8c0f44e59b85cbd076c6dd3d7bda02587
https://github.com/cytoscape/cytoscape-impl/commit/50c4e9f8c0f44e59b85cbd076c6dd3d7bda02587
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NamedTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/PopupMenuHelper.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/StaticTaskFactoryProvisioner.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
A
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SuidSearchUtil.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTaskFactory.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTogglableTaskFactory.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/TaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
Log Message:
-----------
Merge remote-tracking branch 'origin/develop' into develop
Commit: 94703e0c3f2f341ec76a878c348988cdf6831740
https://github.com/cytoscape/cytoscape-impl/commit/94703e0c3f2f341ec76a878c348988cdf6831740
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-25 (Thu, 25 Mar 2021)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/CyActivator.java
Log Message:
-----------
Add documentation for description field in Apps JSON
Commit: f47c1e080cd1b2b9122b73c2a1f6a9627677de99
https://github.com/cytoscape/cytoscape-impl/commit/f47c1e080cd1b2b9122b73c2a1f6a9627677de99
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-26 (Fri, 26 Mar 2021)
Changed paths:
M app-impl/src/main/java/org/cytoscape/app/internal/CyActivator.java
M app-impl/src/main/java/org/cytoscape/app/internal/manager/AppManager.java
M
app-impl/src/main/java/org/cytoscape/app/internal/net/server/CyHttpdFactoryImpl.java
M app-impl/src/main/java/org/cytoscape/app/internal/task/ListAppsTask.java
M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/DynamicTaskFactoryProvisionerImpl.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/AbstractHideFromSelectionTaskFactory.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/hide/AbstractUnHideTaskFactory.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/select/SelectUtils.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/CyActivator.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/action/GraphicsDetailAction.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/NamedTaskFactory.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/PopupMenuHelper.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/StaticTaskFactoryProvisioner.java
M
ding-impl/ding-presentation-impl/src/main/java/org/cytoscape/ding/impl/cyannotator/utils/ViewUtils.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/Degree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/GetTableCell.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/InDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/IsDirected.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/OutDegree.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SourceID.java
A
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/SuidSearchUtil.java
M
equations-functions-impl/src/main/java/org/cytoscape/equations/internal/functions/TargetID.java
M
equations-impl/src/main/java/org/cytoscape/equations/internal/EquationParserImpl.java
M
io-impl/impl/src/main/java/org/cytoscape/io/internal/write/graphics/PDFWriter.java
M
session-impl/src/main/java/org/cytoscape/session/internal/CySessionManagerImpl.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/dialogs/PreferencesDialog.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTaskFactory.java
A
swing-application-impl/src/main/java/org/cytoscape/internal/task/DynamicTogglableTaskFactory.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/task/TaskFactoryTunableAction.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/CytoscapeMenuPopulator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMainPanel.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkMediator.java
M
swing-application-impl/src/main/java/org/cytoscape/internal/view/NetworkSearchBar.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/CyActivator.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ColorColumnTestTask.java
R
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ColorColumnTestTaskFactory.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/HideColumnTask.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/HideColumnTaskFactory.java
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTask.java
A
table-browser-impl/src/main/java/org/cytoscape/browser/internal/task/ToggleTextWrapTaskFactory.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/AbstractTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/DefaultTableBrowser.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableBrowserMediator.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/TableRenderer.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/tools/GeneralOptionsControl.java
M
table-browser-impl/src/main/java/org/cytoscape/browser/internal/view/tools/RowHeightControl.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/CyActivator.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/TableRenderingEngineImpl.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/VisualPropertyChangeListener.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTable.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableCellRenderer.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTableModel.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/BrowserTablePresentation.java
M
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/impl/PopupMenuHelper.java
R
table-presentation-impl/src/main/java/org/cytoscape/view/table/internal/util/StaticTaskFactoryProvisioner.java
M
table-presentation-impl/src/test/java/org/cytoscape/view/table/BrowserTableColumnModelTest.java
M
table-presentation-impl/src/test/java/org/cytoscape/view/table/BrowserTableTest.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualPropertySheetItem.java
M
vizmap-gui-impl/src/main/java/org/cytoscape/view/vizmap/gui/internal/view/VisualStylePanel.java
M
work-swing-impl/impl/src/main/java/org/cytoscape/work/internal/tunables/JPanelTunableMutator.java
Log Message:
-----------
Merge branch 'develop' into CYTOSCAPE-12799
Commit: cd8c9392adfbcd1379d39728e1372519637c3cd9
https://github.com/cytoscape/cytoscape-impl/commit/cd8c9392adfbcd1379d39728e1372519637c3cd9
Author: dotasek <dotasek....@gmail.com>
Date: 2021-03-26 (Fri, 26 Mar 2021)
Changed paths:
M
core-task-impl/src/main/java/org/cytoscape/task/internal/filter/CreateFilterTask.java
M
core-task-impl/src/main/java/org/cytoscape/task/internal/filter/TransformerJsonTunable.java
M
core-task-impl/src/test/java/org/cytoscape/task/internal/filter/CreateFilterTaskTest.java
Log Message:
-----------
Report invalid Filter JSON or invalid Transformer as Exception
Compare:
https://github.com/cytoscape/cytoscape-impl/compare/638cbf8f7d05...cd8c9392adfb
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