Branch: refs/heads/master
Home: https://github.com/PathwayCommons/factoid
Commit: 4b5e5db24bb764a06b1d34aaf9a16d6adde68034
https://github.com/PathwayCommons/factoid/commit/4b5e5db24bb764a06b1d34aaf9a16d6adde68034
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
added query string and get(id) function, untested
Commit: 2a6f5b19e18b21695f03e5be6e01f018efde5cff
https://github.com/PathwayCommons/factoid/commit/2a6f5b19e18b21695f03e5be6e01f018efde5cff
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
remove unnecessary catch blocks
Commit: 2f6fe7d58b1eb36a549504228f6b077361a4cefd
https://github.com/PathwayCommons/factoid/commit/2f6fe7d58b1eb36a549504228f6b077361a4cefd
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
Log Message:
-----------
add test case 0 and test case 1
Commit: 43b08e494fa8dbf7bb6d43d3a89fa65eb17e1a8f
https://github.com/PathwayCommons/factoid/commit/43b08e494fa8dbf7bb6d43d3a89fa65eb17e1a8f
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
Log Message:
-----------
added test case 2, test case 3
Commit: 12b1438c657d64262cf9671163f6d92034992e62
https://github.com/PathwayCommons/factoid/commit/12b1438c657d64262cf9671163f6d92034992e62
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
Log Message:
-----------
added test case 4, 5. Test suite finished
Commit: 7a48ebccbc0bcb1f96de81d56ee7ef61b3969f03
https://github.com/PathwayCommons/factoid/commit/7a48ebccbc0bcb1f96de81d56ee7ef61b3969f03
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-03 (Mon, 03 Apr 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
Merge pull request #1161 from PathwayCommons/v0.23.0
Version 0.23.0
Commit: a7760976a4b7cb94b6e927f7c84dd506d9a951ed
https://github.com/PathwayCommons/factoid/commit/a7760976a4b7cb94b6e927f7c84dd506d9a951ed
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-04 (Tue, 04 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
"neo4j" is now in a variable
Commit: 445ff71defceac66209e93f166e4e28909d236bd
https://github.com/PathwayCommons/factoid/commit/445ff71defceac66209e93f166e4e28909d236bd
Author: Linda (Jia Wen) Li <66929920+lindajiawe...@users.noreply.github.com>
Date: 2023-04-04 (Tue, 04 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
Merge pull request #1159 from PathwayCommons/iss1153-neo4j-get
Neo4j: Add get(id) function
Commit: 9e3bbee4f277f75c31b240da9a16fb12da8f8ecb
https://github.com/PathwayCommons/factoid/commit/9e3bbee4f277f75c31b240da9a16fb12da8f8ecb
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
M src/neo4j/neo4j-functions.js
Log Message:
-----------
merge neighbourhood and neighbourhoodWithoutComplexes. Tested
Commit: 6308ea6e09104e82b8107f88c6fad7673e729935
https://github.com/PathwayCommons/factoid/commit/6308ea6e09104e82b8107f88c6fad7673e729935
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
documentation, deleted neighbourhoodWithoutComplexes
Commit: f5916cf597b606e171087c6c82562c4d0d0ba863
https://github.com/PathwayCommons/factoid/commit/f5916cf597b606e171087c6c82562c4d0d0ba863
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
update getNeighbouringNodes and getInteractions
Commit: 7e6140bb2f2c998bce965bf40871e900c65113e2
https://github.com/PathwayCommons/factoid/commit/7e6140bb2f2c998bce965bf40871e900c65113e2
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
made neighbourhoodReadable, untested
Commit: 61b6f35bacec2464c21c22383b116d221714216c
https://github.com/PathwayCommons/factoid/commit/61b6f35bacec2464c21c22383b116d221714216c
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
Log Message:
-----------
testing for neighbourhoodReadable complete
Commit: 08da273649644771774bf1afa8279193fa0faa0d
https://github.com/PathwayCommons/factoid/commit/08da273649644771774bf1afa8279193fa0faa0d
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
get() updated and tested
Commit: ed0b7fc1b521beaf258392c64995368e746f6617
https://github.com/PathwayCommons/factoid/commit/ed0b7fc1b521beaf258392c64995368e746f6617
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
Log Message:
-----------
documentation change and switching let to const
Commit: 26a0dd0ec7ea1d9a95f4e6179335616d8ac664d2
https://github.com/PathwayCommons/factoid/commit/26a0dd0ec7ea1d9a95f4e6179335616d8ac664d2
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M src/server/index.js
A src/server/routes/api/document/graphdb.js
Log Message:
-----------
Change feeds on rethinkdb for document for GraphDB
Commit: 84331bfa40d9d60d24fc4bcfa186f24f2a3b5547
https://github.com/PathwayCommons/factoid/commit/84331bfa40d9d60d24fc4bcfa186f24f2a3b5547
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-05 (Wed, 05 Apr 2023)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Bypass when a graph db instance isn't available to driver
Commit: 38ba4efcebe1851a41fff6b2e027f267cd8b9c20
https://github.com/PathwayCommons/factoid/commit/38ba4efcebe1851a41fff6b2e027f267cd8b9c20
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/fixtures.js
Log Message:
-----------
Remove fixture creation on test.
Commit: 789eff0be51b6323953be31e3c3106c71e0d2ff7
https://github.com/PathwayCommons/factoid/commit/789eff0be51b6323953be31e3c3106c71e0d2ff7
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/config.js
Log Message:
-----------
Use default neo4j database
Commit: 0fcc4b069ccecbab8817895e26a0da91f1ba01db
https://github.com/PathwayCommons/factoid/commit/0fcc4b069ccecbab8817895e26a0da91f1ba01db
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
M src/neo4j/test-functions.js
Log Message:
-----------
Group the session configuration.
Commit: 5a8456259c44c95bd07e7bef86c62450b5639786
https://github.com/PathwayCommons/factoid/commit/5a8456259c44c95bd07e7bef86c62450b5639786
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/add-nodes-edges.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
added group field, partially tested
Commit: 6ea0cd3fe402a0e82a4f24a213494b0a34522b63
https://github.com/PathwayCommons/factoid/commit/6ea0cd3fe402a0e82a4f24a213494b0a34522b63
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/neo4j/neo4j-driver.js
Log Message:
-----------
Add a helper to get a session.
Commit: 732abb0cb2b44074ff3efdc8e758f3ba92645e47
https://github.com/PathwayCommons/factoid/commit/732abb0cb2b44074ff3efdc8e758f3ba92645e47
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
M src/neo4j/test-functions.js
Log Message:
-----------
Use the helper function to get a session
Commit: a913490fee81d662971b2afe8bb4eb42043932b4
https://github.com/PathwayCommons/factoid/commit/a913490fee81d662971b2afe8bb4eb42043932b4
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/neo4j/test-functions.js
Log Message:
-----------
Remove unused config var
Commit: 60586d772537d3392864e58d385df8ddf18911b0
https://github.com/PathwayCommons/factoid/commit/60586d772537d3392864e58d385df8ddf18911b0
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
Log Message:
-----------
changed 'neighbouringNodes' field to 'nodes'
Commit: cbf3172ad7471ba40027768dbeb8b462a1b21e47
https://github.com/PathwayCommons/factoid/commit/cbf3172ad7471ba40027768dbeb8b462a1b21e47
Author: Linda (Jia Wen) Li <66929920+lindajiawe...@users.noreply.github.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
Merge pull request #1165 from
PathwayCommons/iss1163-neo4j-update-search-functions
Neo4j: Update the search functions
Commit: d17b942e3d95195e94dcd1383dbffbcf7793d850
https://github.com/PathwayCommons/factoid/commit/d17b942e3d95195e94dcd1383dbffbcf7793d850
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
M neo4j-test/search-tests.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
Merge branch 'unstable' into hardcoded-neo4j-database
# Conflicts:
# src/neo4j/neo4j-functions.js
Commit: 75541c971377df76e614d43fd50047491fba58c6
https://github.com/PathwayCommons/factoid/commit/75541c971377df76e614d43fd50047491fba58c6
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/fixtures.js
M src/config.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/test-functions.js
Log Message:
-----------
Merge pull request #1169 from PathwayCommons/hardcoded-neo4j-database
neo4j driver refactoring
Commit: 941718fce4a9c7056ae6983fb6e12cd307fb3d76
https://github.com/PathwayCommons/factoid/commit/941718fce4a9c7056ae6983fb6e12cd307fb3d76
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
M neo4j-test/fixtures.js
M neo4j-test/search-tests.js
M src/config.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
M src/neo4j/test-functions.js
Log Message:
-----------
Merge branch 'unstable' into iss1156_submit-doc-2-graphdb
Commit: ff1f255266dc197da6c713c39426bc6bfe4c9cdb
https://github.com/PathwayCommons/factoid/commit/ff1f255266dc197da6c713c39426bc6bfe4c9cdb
Author: Linda (Jia Wen) Li <66929920+lindajiawe...@users.noreply.github.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
M neo4j-test/fixtures.js
M neo4j-test/search-tests.js
M src/config.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
M src/neo4j/test-functions.js
Log Message:
-----------
Merge branch 'unstable' into iss1164-neo4j-group
Commit: 39e32d3a513dd697c0514221e091c7532c6a6933
https://github.com/PathwayCommons/factoid/commit/39e32d3a513dd697c0514221e091c7532c6a6933
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
R neo4j-test/doct_tests_1.json
Log Message:
-----------
delete unnecessary json test file
Commit: 757ffa79eef36e0fd4c8f610e4f8d9f8f9fd2e69
https://github.com/PathwayCommons/factoid/commit/757ffa79eef36e0fd4c8f610e4f8d9f8f9fd2e69
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests.js
Log Message:
-----------
doc-tests.js updated for 'group'
Commit: a0f1496d120270cfae1a857507ab4a8cf0b2b415
https://github.com/PathwayCommons/factoid/commit/a0f1496d120270cfae1a857507ab4a8cf0b2b415
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Initialize neo4j but simply log if it doesn't exist.
Commit: 3a9dad0d81aa6e8321b44e8525cfe97c1a13ee45
https://github.com/PathwayCommons/factoid/commit/3a9dad0d81aa6e8321b44e8525cfe97c1a13ee45
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-06 (Thu, 06 Apr 2023)
Changed paths:
M neo4j-test/doc-tests-complex.js
Log Message:
-----------
doc-tests-complex.js updated for 'group'
Commit: 3f1024ffc3b96e7ec89ad47f233f921b1ec8a5ce
https://github.com/PathwayCommons/factoid/commit/3f1024ffc3b96e7ec89ad47f233f921b1ec8a5ce
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M neo4j-test/add-nodes-edges.js
Log Message:
-----------
minor changes to test names
Commit: 2ce253e859260d048e58f1250fe152e38b306aef
https://github.com/PathwayCommons/factoid/commit/2ce253e859260d048e58f1250fe152e38b306aef
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
added constraint function, apoc lock on query string
Commit: bdc51810788b15601ba0211951526e9d71503cb2
https://github.com/PathwayCommons/factoid/commit/bdc51810788b15601ba0211951526e9d71503cb2
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
constraint function now in use
Commit: 26d1cb3af0eada46b7e331c07e126e057cf4724c
https://github.com/PathwayCommons/factoid/commit/26d1cb3af0eada46b7e331c07e126e057cf4724c
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M src/neo4j/neo4j-document.js
Log Message:
-----------
fixed so chebi ids are lower case in `component`
Commit: 6a5c80068c3ce82cb57c21ca013d25bf5ac60634
https://github.com/PathwayCommons/factoid/commit/6a5c80068c3ce82cb57c21ca013d25bf5ac60634
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M neo4j-test/add-nodes-edges.js
M neo4j-test/doc-tests-complex.js
M neo4j-test/doc-tests.js
R neo4j-test/doct_tests_1.json
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
Log Message:
-----------
Merge pull request #1168 from PathwayCommons/iss1164-neo4j-group
Neo4j: Add group field
Commit: 4e418911041d69a1f99fb944bfd63fc8c6ac02a0
https://github.com/PathwayCommons/factoid/commit/4e418911041d69a1f99fb944bfd63fc8c6ac02a0
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-10 (Mon, 10 Apr 2023)
Changed paths:
M neo4j-test/add-nodes-edges.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
M src/server/index.js
A src/server/routes/api/document/graphdb.js
Log Message:
-----------
Merge pull request #1170 from PathwayCommons/iss1156_submit-doc-2-graphdb
Submit documents to neo4j on public
Commit: 242ab88bf33b36d969fc3a604d8a642cdb72e9ef
https://github.com/PathwayCommons/factoid/commit/242ab88bf33b36d969fc3a604d8a642cdb72e9ef
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Ignore rethinkdb restore; Swallow errors
Commit: d35a00d65598e970850d5d302f7778794f7f0817
https://github.com/PathwayCommons/factoid/commit/d35a00d65598e970850d5d302f7778794f7f0817
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Merge pull request #1172 from PathwayCommons/iss1156_restore-2-graphdb
Refactor: To Neo4j on submit
Commit: cb59eacbb208207162324f46090974d99e05debe
https://github.com/PathwayCommons/factoid/commit/cb59eacbb208207162324f46090974d99e05debe
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M README.md
M src/config.js
Log Message:
-----------
Add config variable for Graph DB CRON jobs
Commit: d3d5dbd2b5ea7a7a6a958470b25900349ad57a11
https://github.com/PathwayCommons/factoid/commit/d3d5dbd2b5ea7a7a6a958470b25900349ad57a11
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-11 (Tue, 11 Apr 2023)
Changed paths:
M src/server/routes/api/document/graphdb.js
M src/server/update-cron.js
Log Message:
-----------
Implement a refresh function for Graph DB
Commit: d49a1a3f0eea3cd28fd154686c0918400bb17d74
https://github.com/PathwayCommons/factoid/commit/d49a1a3f0eea3cd28fd154686c0918400bb17d74
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-12 (Wed, 12 Apr 2023)
Changed paths:
M README.md
M src/config.js
M src/server/update-cron.js
Log Message:
-----------
Rename the config variable
Commit: 0c574efee0003060d7993d68f54d3129c3aa986e
https://github.com/PathwayCommons/factoid/commit/0c574efee0003060d7993d68f54d3129c3aa986e
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-12 (Wed, 12 Apr 2023)
Changed paths:
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Set the last update time following dump
Commit: b2d0f84845bbe45fbe6aaadfe50886a19ed3eab1
https://github.com/PathwayCommons/factoid/commit/b2d0f84845bbe45fbe6aaadfe50886a19ed3eab1
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-12 (Wed, 12 Apr 2023)
Changed paths:
M src/neo4j/index.js
M src/neo4j/neo4j-functions.js
M src/server/routes/api/document/graphdb.js
Log Message:
-----------
Export the deleteAllNodesAndEdges testing function
Commit: 0f7b6acba4bd9b23d119bf0bf0cd2318ee8c7c07
https://github.com/PathwayCommons/factoid/commit/0f7b6acba4bd9b23d119bf0bf0cd2318ee8c7c07
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-12 (Wed, 12 Apr 2023)
Changed paths:
M src/server/index.js
M src/server/routes/api/document/graphdb.js
M src/server/routes/api/document/update.js
Log Message:
-----------
On initialization, refresh graphdb but not docs
Commit: a2bcde6ac06e598650b0f03f0269a7156032d0a3
https://github.com/PathwayCommons/factoid/commit/a2bcde6ac06e598650b0f03f0269a7156032d0a3
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
M src/config.js
Log Message:
-----------
Refresh graph db daily.
Commit: 2b6be20fe304eef124c258c3cd1a8382923b51a4
https://github.com/PathwayCommons/factoid/commit/2b6be20fe304eef124c258c3cd1a8382923b51a4
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
M src/neo4j/query-strings.js
Log Message:
-----------
update cypher query string to include apoc.lock
Commit: fc087cecac59a663abf1cf97ddfef0c561bb7d85
https://github.com/PathwayCommons/factoid/commit/fc087cecac59a663abf1cf97ddfef0c561bb7d85
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
R src/neo4j/get-doc-functions.js
R src/neo4j/graph-data.js
Log Message:
-----------
delete unused files
Commit: 1029fd48f67d5638a84d9fb632aaacb57df283cc
https://github.com/PathwayCommons/factoid/commit/1029fd48f67d5638a84d9fb632aaacb57df283cc
Author: Linda (Jia Wen) Li <66929920+lindajiawe...@users.noreply.github.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
R src/neo4j/get-doc-functions.js
R src/neo4j/graph-data.js
M src/neo4j/query-strings.js
Log Message:
-----------
Merge pull request #1176 from PathwayCommons/iss1173-neo4j-lock-relationships
Neo4j: Lock on edges to prevent duplication
Commit: 296fce114172f74f5c63e9a1d2dd631a22ee9532
https://github.com/PathwayCommons/factoid/commit/296fce114172f74f5c63e9a1d2dd631a22ee9532
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-04-13 (Thu, 13 Apr 2023)
Changed paths:
M README.md
M src/config.js
M src/neo4j/index.js
M src/neo4j/neo4j-functions.js
M src/server/index.js
M src/server/routes/api/document/graphdb.js
M src/server/routes/api/document/update.js
M src/server/update-cron.js
Log Message:
-----------
Merge pull request #1175 from PathwayCommons/iss1156_graphdb-cron
Refresh Graph DB data
Commit: b6c2100be56b9c7b7e801a49703a580fc0ab61f1
https://github.com/PathwayCommons/factoid/commit/b6c2100be56b9c7b7e801a49703a580fc0ab61f1
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M package.json
Log Message:
-----------
users can run neo4j tests using `npm run neo4j-test`
Commit: 572601301ea9a9036c6b00c2529d2c6621c067b1
https://github.com/PathwayCommons/factoid/commit/572601301ea9a9036c6b00c2529d2c6621c067b1
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M README.md
Log Message:
-----------
update READ.me for neo4j-test
Commit: d095b9aa9ac3f959fa711029c1b75bcec4c77444
https://github.com/PathwayCommons/factoid/commit/d095b9aa9ac3f959fa711029c1b75bcec4c77444
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-14 (Fri, 14 Apr 2023)
Changed paths:
M README.md
Log Message:
-----------
add neo4j version and apoc links
Commit: c4e65a60bec552000653dfca2cbc4833fbbf24e6
https://github.com/PathwayCommons/factoid/commit/c4e65a60bec552000653dfca2cbc4833fbbf24e6
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-18 (Tue, 18 Apr 2023)
Changed paths:
M README.md
Log Message:
-----------
add config lines
Commit: e543ce4f3a69d4c09685a2dd03a85c7d9d1ff69e
https://github.com/PathwayCommons/factoid/commit/e543ce4f3a69d4c09685a2dd03a85c7d9d1ff69e
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-19 (Wed, 19 Apr 2023)
Changed paths:
M README.md
M package.json
Log Message:
-----------
adjust READ.me, npm run neo4j-test removed
Commit: 65800325fa3d2e52657ec3af5379203f80b40d9a
https://github.com/PathwayCommons/factoid/commit/65800325fa3d2e52657ec3af5379203f80b40d9a
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
R neo4j-test/add-nodes-edges.js
R neo4j-test/connect-neo4j.js
R neo4j-test/doc-tests-complex.js
R neo4j-test/doc-tests.js
R neo4j-test/document/complex_tests_1.json
R neo4j-test/document/complex_tests_2.json
R neo4j-test/document/complex_tests_3.json
R neo4j-test/document/complex_tests_4.json
R neo4j-test/document/complex_tests_5.json
R neo4j-test/document/complex_tests_6.json
R neo4j-test/document/doct_tests_1.json
R neo4j-test/document/doct_tests_2.json
R neo4j-test/document/doct_tests_3.json
R neo4j-test/document/doct_tests_4.json
R neo4j-test/document/doct_tests_5.json
R neo4j-test/document/testDoc.json
R neo4j-test/fixtures.js
R neo4j-test/search-tests.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-functions.js
A test/neo4j-test/add-nodes-edges.js
A test/neo4j-test/connect-neo4j.js
A test/neo4j-test/doc-tests-complex.js
A test/neo4j-test/doc-tests.js
A test/neo4j-test/document/complex_tests_1.json
A test/neo4j-test/document/complex_tests_2.json
A test/neo4j-test/document/complex_tests_3.json
A test/neo4j-test/document/complex_tests_4.json
A test/neo4j-test/document/complex_tests_5.json
A test/neo4j-test/document/complex_tests_6.json
A test/neo4j-test/document/doct_tests_1.json
A test/neo4j-test/document/doct_tests_2.json
A test/neo4j-test/document/doct_tests_3.json
A test/neo4j-test/document/doct_tests_4.json
A test/neo4j-test/document/doct_tests_5.json
A test/neo4j-test/document/testDoc.json
A test/neo4j-test/fixtures.js
A test/neo4j-test/search-tests.js
Log Message:
-----------
move neo4j tests to main test folder. Comment out warnings
Commit: 4fdd7316d62ec87e8598e039fe5c2d0e659d6e22
https://github.com/PathwayCommons/factoid/commit/4fdd7316d62ec87e8598e039fe5c2d0e659d6e22
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M src/neo4j/neo4j-document.js
Log Message:
-----------
documentation for neo4j-document.js
Commit: e58cb099b409e8ded6dc143110edb992d16d754a
https://github.com/PathwayCommons/factoid/commit/e58cb099b409e8ded6dc143110edb992d16d754a
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
documentation for neo4j-functions.js
Commit: 0db7ce00e77fc268e9a1fe7279103858617330ad
https://github.com/PathwayCommons/factoid/commit/0db7ce00e77fc268e9a1fe7279103858617330ad
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M src/neo4j/neo4j-document.js
M src/neo4j/query-strings.js
Log Message:
-----------
documentation for query-strings.js
Commit: 15794119cb08c15c1a1ea058d8f39e724abf14c4
https://github.com/PathwayCommons/factoid/commit/15794119cb08c15c1a1ea058d8f39e724abf14c4
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M README.md
M src/config.js
M src/neo4j/index.js
M src/neo4j/neo4j-functions.js
M src/server/index.js
M src/server/routes/api/document/graphdb.js
M src/server/routes/api/document/update.js
M src/server/update-cron.js
Log Message:
-----------
Merge branch 'unstable' into iss1174-neo4j-update-readme
Commit: 7a5690fc84a58de2881245bff3f7c10b88091e28
https://github.com/PathwayCommons/factoid/commit/7a5690fc84a58de2881245bff3f7c10b88091e28
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-20 (Thu, 20 Apr 2023)
Changed paths:
M src/neo4j/test-functions.js
M test/neo4j-test/add-nodes-edges.js
M test/neo4j-test/doc-tests-complex.js
M test/neo4j-test/doc-tests.js
M test/neo4j-test/search-tests.js
Log Message:
-----------
tweak tests. Still commenting out suites that give warnings
Commit: 53290c5e470ca8527b4d3908e08b5c31c4b98eed
https://github.com/PathwayCommons/factoid/commit/53290c5e470ca8527b4d3908e08b5c31c4b98eed
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-21 (Fri, 21 Apr 2023)
Changed paths:
M src/neo4j/index.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/test-functions.js
Log Message:
-----------
import <relative path> tweak
Commit: 077675253bf181d29bc387dfaa4e6d35309f8f0b
https://github.com/PathwayCommons/factoid/commit/077675253bf181d29bc387dfaa4e6d35309f8f0b
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-21 (Fri, 21 Apr 2023)
Changed paths:
M src/neo4j/test-functions.js
Log Message:
-----------
documentation for test-functions.js
Commit: c5f9f13cccb768b50494b6af024ea5e23bfd9791
https://github.com/PathwayCommons/factoid/commit/c5f9f13cccb768b50494b6af024ea5e23bfd9791
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-24 (Mon, 24 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
Log Message:
-----------
small change with async/await in neo4j-functions.js
Commit: 9ef8db9f91312fd47adfe5b66580c5f51139af3c
https://github.com/PathwayCommons/factoid/commit/9ef8db9f91312fd47adfe5b66580c5f51139af3c
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-04-24 (Mon, 24 Apr 2023)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Use positional argument maxAge for cache set
Commit: 7d3a59022c8fc9d287047393eb022d8aa7181919
https://github.com/PathwayCommons/factoid/commit/7d3a59022c8fc9d287047393eb022d8aa7181919
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-24 (Mon, 24 Apr 2023)
Changed paths:
A .env
A docker-compose.yml
R src/neo4j/.env
R src/neo4j/docker-compose.yml
Log Message:
-----------
move docker-compose.yml and .env to parent directory
Commit: f7b1a1e9d938ab66af5f2b450d296392c418bfc3
https://github.com/PathwayCommons/factoid/commit/f7b1a1e9d938ab66af5f2b450d296392c418bfc3
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M README.md
M src/neo4j/test-functions.js
Log Message:
-----------
small change with async/await in test-functions
Commit: 92e5ff96d32757c801380f63664aa6aa9fe38a73
https://github.com/PathwayCommons/factoid/commit/92e5ff96d32757c801380f63664aa6aa9fe38a73
Author: Max Franz <maxkfr...@gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #1179 from PathwayCommons/iss1151_set-maxAge
Use positional argument 'maxAge' for cache
Commit: 8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670
https://github.com/PathwayCommons/factoid/commit/8ec5dd0ef65dbefa4399b0b6774b5cebddcf3670
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M README.md
Log Message:
-----------
delete READ.me line about neo4j tests
Commit: 8d9b7d764e1a41ed4a1cd693df4b0d62901cc84b
https://github.com/PathwayCommons/factoid/commit/8d9b7d764e1a41ed4a1cd693df4b0d62901cc84b
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-25 (Tue, 25 Apr 2023)
Changed paths:
M test/neo4j-test/add-nodes-edges.js
M test/neo4j-test/doc-tests-complex.js
M test/neo4j-test/doc-tests.js
M test/neo4j-test/search-tests.js
Log Message:
-----------
uncomment the tests (warnings still present)
Commit: 3b34d2bf3c76027521d60348372e55be01bea8a8
https://github.com/PathwayCommons/factoid/commit/3b34d2bf3c76027521d60348372e55be01bea8a8
Author: Linda (Jia Wen) Li <lindor.2...@gmail.com>
Date: 2023-04-26 (Wed, 26 Apr 2023)
Changed paths:
M src/neo4j/neo4j-functions.js
M src/neo4j/test-functions.js
Log Message:
-----------
use transaction instead of executeRead/Write. Warnings gone
Commit: e8c894e1c8f2ade179fd9249a8a55b210d7c0c23
https://github.com/PathwayCommons/factoid/commit/e8c894e1c8f2ade179fd9249a8a55b210d7c0c23
Author: Linda (Jia Wen) Li <66929920+lindajiawe...@users.noreply.github.com>
Date: 2023-04-27 (Thu, 27 Apr 2023)
Changed paths:
A .env
M README.md
A docker-compose.yml
R neo4j-test/add-nodes-edges.js
R neo4j-test/connect-neo4j.js
R neo4j-test/doc-tests-complex.js
R neo4j-test/doc-tests.js
R neo4j-test/document/complex_tests_1.json
R neo4j-test/document/complex_tests_2.json
R neo4j-test/document/complex_tests_3.json
R neo4j-test/document/complex_tests_4.json
R neo4j-test/document/complex_tests_5.json
R neo4j-test/document/complex_tests_6.json
R neo4j-test/document/doct_tests_1.json
R neo4j-test/document/doct_tests_2.json
R neo4j-test/document/doct_tests_3.json
R neo4j-test/document/doct_tests_4.json
R neo4j-test/document/doct_tests_5.json
R neo4j-test/document/testDoc.json
R neo4j-test/fixtures.js
R neo4j-test/search-tests.js
M package.json
R src/neo4j/.env
R src/neo4j/docker-compose.yml
M src/neo4j/index.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
M src/neo4j/test-functions.js
A test/neo4j-test/add-nodes-edges.js
A test/neo4j-test/connect-neo4j.js
A test/neo4j-test/doc-tests-complex.js
A test/neo4j-test/doc-tests.js
A test/neo4j-test/document/complex_tests_1.json
A test/neo4j-test/document/complex_tests_2.json
A test/neo4j-test/document/complex_tests_3.json
A test/neo4j-test/document/complex_tests_4.json
A test/neo4j-test/document/complex_tests_5.json
A test/neo4j-test/document/complex_tests_6.json
A test/neo4j-test/document/doct_tests_1.json
A test/neo4j-test/document/doct_tests_2.json
A test/neo4j-test/document/doct_tests_3.json
A test/neo4j-test/document/doct_tests_4.json
A test/neo4j-test/document/doct_tests_5.json
A test/neo4j-test/document/testDoc.json
A test/neo4j-test/fixtures.js
A test/neo4j-test/search-tests.js
Log Message:
-----------
Merge pull request #1177 from PathwayCommons/iss1174-neo4j-update-readme
Neo4j: Refactoring and Documentation
Commit: 16859e307ccc8087049ee4e621d875a739fef707
https://github.com/PathwayCommons/factoid/commit/16859e307ccc8087049ee4e621d875a739fef707
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-05-15 (Mon, 15 May 2023)
Changed paths:
M src/server/routes/api/document/indra.js
Log Message:
-----------
INDRA entity search is more generic (includes Famplex)
Commit: bbb6b063d853d7205071af069f54e23ffc3e0e51
https://github.com/PathwayCommons/factoid/commit/bbb6b063d853d7205071af069f54e23ffc3e0e51
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-05-17 (Wed, 17 May 2023)
Changed paths:
M src/model/element/entity.js
Log Message:
-----------
Add member xrefs to the biopax export.
Commit: 6d50dd0fe38f714eab248e716e8158e5a131671a
https://github.com/PathwayCommons/factoid/commit/6d50dd0fe38f714eab248e716e8158e5a131671a
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-05-18 (Thu, 18 May 2023)
Changed paths:
M src/model/element/entity.js
M src/server/routes/api/document/indra.js
Log Message:
-----------
Merge pull request #1182 from PathwayCommons/iss1181_famplex-family
Support FamPlex family members
Commit: b37e604e82e46cf110dcad3d94449d49c6eb5d99
https://github.com/PathwayCommons/factoid/commit/b37e604e82e46cf110dcad3d94449d49c6eb5d99
Author: Max Franz <maxkfr...@gmail.com>
Date: 2023-05-19 (Fri, 19 May 2023)
Changed paths:
M package-lock.json
M src/client/components/editor/info-panel.js
M src/client/components/element-info/entity-info.js
M src/client/components/element-info/interaction-info.js
M src/styles/editor/editor.css
Log Message:
-----------
Show 'coming soon' message for articles in the explorer w/o PubMed data
Also: Workaround for the context info overlapping the figure. #1050
Commit: b6fbb8ac1da97d97e1163296f5a7979577a26780
https://github.com/PathwayCommons/factoid/commit/b6fbb8ac1da97d97e1163296f5a7979577a26780
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-19 (Mon, 19 Jun 2023)
Changed paths:
M src/model/element/entity-type.js
Log Message:
-----------
Declare a named complex entity type.
Commit: e7a3694af004cf3ab91d28b7cd6aeeaefd2c082f
https://github.com/PathwayCommons/factoid/commit/e7a3694af004cf3ab91d28b7cd6aeeaefd2c082f
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-19 (Mon, 19 Jun 2023)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
Log Message:
-----------
Allow gene/products to have a summary; display named complex using protein
template
Commit: ca4f9542a180efbecda68550fe57188d17101863
https://github.com/PathwayCommons/factoid/commit/ca4f9542a180efbecda68550fe57188d17101863
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
Swap twitter with node-twitter-api-v2 package.
Commit: f523a84912e7b780de6c94ad109aa8192fd4c9f6
https://github.com/PathwayCommons/factoid/commit/f523a84912e7b780de6c94ad109aa8192fd4c9f6
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M README.md
M src/config.js
Log Message:
-----------
Update twitter env variable names.
Commit: 82e91ef14a5b50a308ad344177ab792da870e1cb
https://github.com/PathwayCommons/factoid/commit/82e91ef14a5b50a308ad344177ab792da870e1cb
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Prototype for new twitter client.
Commit: 61394c753c6c2560ef42e5931379c138bd1b1aa0
https://github.com/PathwayCommons/factoid/commit/61394c753c6c2560ef42e5931379c138bd1b1aa0
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Drop bearer token.
Commit: d217cbbb2ea0b531e4cd68e88f09d59d128a9ba4
https://github.com/PathwayCommons/factoid/commit/d217cbbb2ea0b531e4cd68e88f09d59d128a9ba4
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M src/server/routes/api/document/index.js
Log Message:
-----------
Leave paper link as reply
Commit: ae6929ccdfc4df8f1c6a28e0a5b107b54b439f95
https://github.com/PathwayCommons/factoid/commit/ae6929ccdfc4df8f1c6a28e0a5b107b54b439f95
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-21 (Wed, 21 Jun 2023)
Changed paths:
M README.md
Log Message:
-----------
Remove mention of Twitter bearer token.
Commit: d0f1f3ca8f6fd4703093f98c8767106c628c24ed
https://github.com/PathwayCommons/factoid/commit/d0f1f3ca8f6fd4703093f98c8767106c628c24ed
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-06-23 (Fri, 23 Jun 2023)
Changed paths:
M README.md
M package-lock.json
M package.json
M src/config.js
M src/server/routes/api/document/index.js
Log Message:
-----------
Merge pull request #1188 from PathwayCommons/iss1186_twitter-support
Patch for Twitter support
Commit: 0cd734736eff76015b57ede06aabc0543d788626
https://github.com/PathwayCommons/factoid/commit/0cd734736eff76015b57ede06aabc0543d788626
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-23 (Fri, 23 Jun 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.23.1
Commit: b998bd81325738aaa446bb754bcc541b5b36ad06
https://github.com/PathwayCommons/factoid/commit/b998bd81325738aaa446bb754bcc541b5b36ad06
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-23 (Fri, 23 Jun 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.23.2
Commit: f9bc6740bdb7f45ca0b51946ba32dab0a248ca18
https://github.com/PathwayCommons/factoid/commit/f9bc6740bdb7f45ca0b51946ba32dab0a248ca18
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-06-23 (Fri, 23 Jun 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
Merge pull request #1189 from PathwayCommons/v0.23.2
v0.23.2
Commit: e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f
https://github.com/PathwayCommons/factoid/commit/e8d7e9b44d6fa4fde8c363a1bc5dcb13c40a041f
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-27 (Tue, 27 Jun 2023)
Changed paths:
M src/model/element/entity.js
Log Message:
-----------
Distinguish complex, namedComplex and other with specific BioPAX template
attributes.
Commit: 35775eb6f08b5d85e0aa83c698806054bc8bbe70
https://github.com/PathwayCommons/factoid/commit/35775eb6f08b5d85e0aa83c698806054bc8bbe70
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-27 (Tue, 27 Jun 2023)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
Remove unused variables added for #1183
Commit: ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2
https://github.com/PathwayCommons/factoid/commit/ab0291ef2a6fdc15b1dd055bcc980bfa4e7e92f2
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-27 (Tue, 27 Jun 2023)
Changed paths:
M src/client/components/element-info/entity-info.js
Log Message:
-----------
linting corrections.
Commit: 683af832aed2f9d6fbb041b939d41ddad40d1c67
https://github.com/PathwayCommons/factoid/commit/683af832aed2f9d6fbb041b939d41ddad40d1c67
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-28 (Wed, 28 Jun 2023)
Changed paths:
M src/model/element/entity.js
Log Message:
-----------
Convert a namedComplex to a complex for BioPAX template.
Commit: efef1d34ce511145a60f67e34c22eb0228242b65
https://github.com/PathwayCommons/factoid/commit/efef1d34ce511145a60f67e34c22eb0228242b65
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-06-28 (Wed, 28 Jun 2023)
Changed paths:
M src/model/element/entity.js
Log Message:
-----------
Not necessary to set empty components list.
Commit: c7052d5a95388c092bf6c0b6920fc0b08b886153
https://github.com/PathwayCommons/factoid/commit/c7052d5a95388c092bf6c0b6920fc0b08b886153
Author: Jeffrey <jvw...@gmail.com>
Date: 2023-06-29 (Thu, 29 Jun 2023)
Changed paths:
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/model/element/entity-type.js
M src/model/element/entity.js
Log Message:
-----------
Merge pull request #1187 from PathwayCommons/iss1181_named-complex
Famplex: Named complex
Commit: ac7c9aefa1f1f6aa312bebede9a8e9836202b45d
https://github.com/PathwayCommons/factoid/commit/ac7c9aefa1f1f6aa312bebede9a8e9836202b45d
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-07-04 (Tue, 04 Jul 2023)
Changed paths:
M package-lock.json
M package.json
Log Message:
-----------
0.24.0
Commit: 5e29a9438e82e9f390ebe5f05baa4a52a9459795
https://github.com/PathwayCommons/factoid/commit/5e29a9438e82e9f390ebe5f05baa4a52a9459795
Author: Jeffrey Wong <jvw...@gmail.com>
Date: 2023-07-04 (Tue, 04 Jul 2023)
Changed paths:
A .env
M README.md
A docker-compose.yml
R neo4j-test/add-nodes-edges.js
R neo4j-test/connect-neo4j.js
R neo4j-test/doc-tests-complex.js
R neo4j-test/doc-tests.js
R neo4j-test/doct_tests_1.json
R neo4j-test/document/complex_tests_1.json
R neo4j-test/document/complex_tests_2.json
R neo4j-test/document/complex_tests_3.json
R neo4j-test/document/complex_tests_4.json
R neo4j-test/document/complex_tests_5.json
R neo4j-test/document/complex_tests_6.json
R neo4j-test/document/doct_tests_1.json
R neo4j-test/document/doct_tests_2.json
R neo4j-test/document/doct_tests_3.json
R neo4j-test/document/doct_tests_4.json
R neo4j-test/document/doct_tests_5.json
R neo4j-test/document/testDoc.json
R neo4j-test/fixtures.js
R neo4j-test/search-tests.js
M package-lock.json
M package.json
M src/client/components/element-info/entity-assoc-display.js
M src/client/components/element-info/entity-info.js
M src/config.js
M src/model/element/entity-type.js
M src/model/element/entity.js
R src/neo4j/.env
R src/neo4j/docker-compose.yml
R src/neo4j/get-doc-functions.js
R src/neo4j/graph-data.js
M src/neo4j/index.js
M src/neo4j/neo4j-document.js
M src/neo4j/neo4j-driver.js
M src/neo4j/neo4j-functions.js
M src/neo4j/query-strings.js
M src/neo4j/test-functions.js
M src/server/index.js
A src/server/routes/api/document/graphdb.js
M src/server/routes/api/document/index.js
M src/server/routes/api/document/indra.js
M src/server/routes/api/document/update.js
M src/server/update-cron.js
A test/neo4j-test/add-nodes-edges.js
A test/neo4j-test/connect-neo4j.js
A test/neo4j-test/doc-tests-complex.js
A test/neo4j-test/doc-tests.js
A test/neo4j-test/document/complex_tests_1.json
A test/neo4j-test/document/complex_tests_2.json
A test/neo4j-test/document/complex_tests_3.json
A test/neo4j-test/document/complex_tests_4.json
A test/neo4j-test/document/complex_tests_5.json
A test/neo4j-test/document/complex_tests_6.json
A test/neo4j-test/document/doct_tests_1.json
A test/neo4j-test/document/doct_tests_2.json
A test/neo4j-test/document/doct_tests_3.json
A test/neo4j-test/document/doct_tests_4.json
A test/neo4j-test/document/doct_tests_5.json
A test/neo4j-test/document/testDoc.json
A test/neo4j-test/fixtures.js
A test/neo4j-test/search-tests.js
Log Message:
-----------
merge conflicts
Compare:
https://github.com/PathwayCommons/factoid/compare/18f0f7b17fa8...5e29a9438e82
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