Messages by Thread
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[cytoscape/cytoscape-impl] 398d71: Put a search icon in the table browser.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] ad908d: Clicking and dragging the scrollbar handle in the ...
'Christian Lopes' via cytoscape-cvs
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[cytoscape/cytoscape-impl] a6aabe: Fixes a NPE -- ref #12940
'Christian Lopes' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 00d5b9: Custom Graphics no longer resets the color palette...
'Christian Lopes' via cytoscape-cvs
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[PathwayCommons/factoid] c71a62: - Accept limit 'Infinity' interpret as all docs
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] f94cf9: Remove the article from the document JSON.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-api] d166f9: Minor update to javadocs.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 2830b9: Remove search-impl.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 0693da: Remove search-impl from features. Remove lucene 3 ...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 2fe700: Add search2-impl bundle to features.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] d3fbd8: Use node-cache for implementation of doc caching
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 335a58: Upgrade to install4j 9.0.6. Support for mac aarch6...
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] dd45de: Set the doc cache expiry period
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] a7df0b: Better responsiveness of search box on mobile
'Max Franz' via cytoscape-cvs
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[PathwayCommons/factoid] 7e35c3: Cache the entire response when no param values are...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] f18e66: Up limit to 150 docs in search for test.
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 5a4c20: Preprocessing minisearch for authors and entities.
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 7b22b3: - Index more useful fields like pmid, doi, caption
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 88c65b: Merge branch 'iss937_interaction-info' into test-s...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 49b87e: Refactoring to allow individual tables to be searc...
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] 1e52c8: - only update documents with a provided paper Id (...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 7af714: Typo in filter for filtering documents with missin...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 22fec8: Use stable INDRA endpoint.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 78df36: Remove test sleep.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] 2a88bd: Remove build tests
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 3c62ec: Add a test workflow
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape-impl] c4d33f: Reindex when column deleted/renamed.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 05a7a1: Handle adding and deleting of rows.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] 342406: Bump socket.io from 2.1.1 to 2.4.0
'Max Franz' via cytoscape-cvs
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[PathwayCommons/factoid] faa6a8: Bump postcss from 6.0.23 to 7.0.36
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 41a981: Use custom analyzer, use TextField.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] 664981: Bump follow-redirects from 1.14.7 to 1.14.8
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 1b06e7: Bump ajv from 6.10.0 to 6.12.6
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 049cd9: Bump handlebars from 4.6.0 to 4.7.7
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] aca2b3: Bump pathval from 1.1.0 to 1.1.1
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 1a193e: Bump pathval from 1.1.0 to 1.1.1
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 73977e: Bump ua-parser-js from 0.7.17 to 0.7.31
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] cea94d: Bump undefsafe from 2.0.2 to 2.0.5
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 53f1c0: Bump follow-redirects from 1.11.0 to 1.14.7
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 9ff7c1: Updates
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 704846: Bump browserslist from 4.6.6 to 4.19.1
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 82ba8e: Bump lodash from 4.17.15 to 4.17.21
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 11af22: Add example network to readme
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 028855: Updates
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] b30546: Build 3.20.1
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 7dd13e: Bump follow-redirects from 1.11.0 to 1.14.7
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 5512a0: Bump lodash from 4.17.15 to 4.17.21
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 2bfaad: Bump browserslist from 4.6.6 to 4.19.1
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] f8ec55: allow paths for get and set data field
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 8dc47f: Change JSON returns when there is an error to retu...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape.js] 3cae87: Add depthSort option to breadthfirst layout
'Max Franz' via cytoscape-cvs
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[PathwayCommons/factoid] df82dc: Bump cached-path-relative from 1.0.2 to 1.1.0
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] a068e7: Bump node-fetch from 2.6.1 to 2.6.7
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] c8445b: Bump postcss from 6.0.23 to 8.2.13
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 07dec8: 0.19.0
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] a125dd: Remove any delay in export of different types.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 4aea52: Start of search2-impl bundle.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] e5110a: Find negative weight cycles on Bellman-Ford
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape] a158fe: Update README.md
'Alexander Pico' via cytoscape-cvs
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[cytoscape/cytoscape] 637527: Update README.md
'Alexander Pico' via cytoscape-cvs
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[PathwayCommons/factoid] 622730: Bump node-fetch from 2.6.1 to 3.1.1
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 9293ed: Update cy-rest to 3.12.3.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] ab0077: Extract the logic from the endpoints for json, bio...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] c2125c: Fixes for karaf and karaf.bat replacement lines
'Scooter Morris' via cytoscape-cvs
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[PathwayCommons/factoid] 920d5f: Create exports when in production OR there is a mi...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-impl] dc1806: Change JSON returns when there is an error to retu...
'Scooter Morris' via cytoscape-cvs
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[PathwayCommons/factoid] 3a8b7f: Log errors in handler for zip downloads.
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] fc7923: db capability to arbitrarily index table
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 51ecdb: Revert changes to install4j for karaf 4.2.14, set ...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 2ae4ee: Fix typo in assembly pom.xml
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 6a3f37: Set karaf back to 4.2.8, set pax-logging to 1.11.13.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-parent] 6d4628: Set karaf back to 4.2.8, set pax-logging to 1.11.13
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] aa5336: Bump marked from 1.0.0 to 4.0.10
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] a941de: Bump follow-redirects from 1.11.0 to 1.14.7
'dependabot[bot]' via cytoscape-cvs
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[cytoscape/cytoscape.js] 03864c: Compound dragging amendments:
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 74f716: Compound dragging amendments:
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] c0f3c0: bumped diffusion version to 1.6.3 which depends on...
'Chris Churas' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] cff7f7: Update install4j config again.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 51aa00: Update install4j config.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 420e0a: Set cy-rest version to 3.12.3
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-support] 346abc: CYTOSCAPE-12944: Update to pax-logging 1.11.12 and...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-parent] cfbf04: CYTOSCAPE-12944: Update to pax-logging 1.11.12 and...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] ac8a7f: CYTOSCAPE-12944: Update to pax-logging 1.11.12 and...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-app-template] c689f1: Update to pax-logging 1.11.12 and remove SNAPSHOT ...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-impl] fd5cab: Update to pax-logging 1.11.12 and remove SNAPSHOT ...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-api] d2fe6f: Updated to pax-logging 1.11.12 and remove SNAPSHOT...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape] ce7f0c: Update to 3.9.1 -- CYTOSCAPE-12944
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape] 17b627: added build functions for newbs
'Alexander Pico' via cytoscape-cvs
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[PathwayCommons/factoid] a053cd: - Wait for server to run before scheduling exports
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 4fcdd8: Typo in env variable description for exports
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] d8e3c0: Include env variables for export scheduler
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 7fd760: Serve the biopax zip file; Use Changefeeds and.tas...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] c062ea: Config for task delay; encapsulating the logic for...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] ee1288: new sbml app with log4j 2.17.1
'Alexander Pico' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 52ea7f: new sbml app with log4j 2.17.1
'Alexander Pico' via cytoscape-cvs
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[PathwayCommons/factoid] cfdc11: Listen to db changes to create bulk downloads file.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape.js] 2ff450: Update extension.js
'Max Franz' via cytoscape-cvs
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[PathwayCommons/factoid] b822ba: Check bulk file mod time, rather than creation.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 866afe: Update pax-logging and karaf
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-api] 9fae0a: Update pax-logging
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-parent] 311d8b: Update karaf and pax-logging
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-support] b0ed94: Make sure we have the right version of pax-logging...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] a7c792: Update to karaf 4.2.13 (and pax-logging 1.11.11)
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 3684d1: Update pax-logging to 1.11.11
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-parent] 696f11: Externalize javafx build and update to Karaf 4.2.13
'Scooter Morris' via cytoscape-cvs
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[PathwayCommons/factoid] d2b387: Rank the statements via the top (only) evidence pa...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 21fabe: To reduce data size, just retrieve and show the fi...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-admin-scripts] 1e5c92: switched appstore download URL to https
'Chris Churas' via cytoscape-cvs
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[cytoscape/cytoscape-admin-scripts] c55b6b: switched appstore download URL to https
'Chris Churas' via cytoscape-cvs
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[PathwayCommons/factoid] e77b90: Add back the network related papers fallback scheme.
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] a090f9: Document level related papers limited by env var: ...
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 4a0d0d: Accommodate the new schema for semantic search.
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 041920: Use a development version of semantic search now.
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 08272c: Upgrade install4j version to 9.0.5.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] f06dc0: Bump nodemailer from 4.6.8 to 6.6.1
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 4b17dd: Merge pull request #1020 from PathwayCommons/v0.17.0
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] 67a765: 0.18.0
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-impl] eb2f9e: First shot at fixing CYTOSCAPE-12922. Still some ...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape] 0c115a: more build notes
'Alexander Pico' via cytoscape-cvs
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[cytoscape/cytoscape] a9f9be: added notes for first-time cytoscape builds
'Alexander Pico' via cytoscape-cvs
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[cytoscape/cytoscape] 1185ad: Update README.md
'Alexander Pico' via cytoscape-cvs
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[PathwayCommons/factoid] b5ee46: Update read the paper link to eLife
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-parent] e7eb90: Remove code.cytoscape.org references
'Scooter Morris' via cytoscape-cvs
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[PathwayCommons/factoid] 0ec3bc: Network level papers will use existing papers upon...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 96983c: Fix typos in install4j launcher args.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] 44451b: For document-level related papers, preserve existi...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] f8863c: Update launcher config in install4j for karaf 4.3.3.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] 3c250f: Fallback to empty if any failures occur in the net...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] af61df: Temporarily only enable packaging for macOS x64 an...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 7e8d47: Update macos x86 jre bundle.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 24e062: Update macOS aarch64 bundle file name.
'Mike Kucera' via cytoscape-cvs
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[PathwayCommons/factoid] dbc370: Enable the document-level related papers to bypass...
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 1d7508: Initial attempt to update install4j for Java 17.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 0e9e92: Fix javafx dependency.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] 7c28d3: Add AWS Perspective to who-uses list (#914), updat...
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] 890f04: Add AWS Perspective to who-uses list (#914), updat...
'Max Franz' via cytoscape-cvs
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[PathwayCommons/factoid] 459d8f: Merge pull request #1012 from PathwayCommons/v0.16.1
'Jeffrey' via cytoscape-cvs
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[PathwayCommons/factoid] c0dd17: Bump path-parse from 1.0.5 to 1.0.7
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 41fdde: Bump tar from 4.4.8 to 4.4.19
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] 6eb41c: Bump jszip from 3.4.0 to 3.7.0
'dependabot[bot]' via cytoscape-cvs
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[PathwayCommons/factoid] e44201: 0.17.0
'Jeffrey' via cytoscape-cvs
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[cytoscape/cytoscape-app-samples] 824ea2: updated nexus urls
'Alexander Pico' via cytoscape-cvs
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[cytoscape/cytoscape-impl] a4ae26: CYTOSCAPE-12941 Fit Selected should ignore annotat...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 3c5ac2: CYTOSCAPE-12941 Fit Selected should ignore annotat...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 6dbcec: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-api] f45026: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 4748b7: Still more fixes for CYTOSCAPE-12936. Turns out w...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 8a598f: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-api] e88061: CYTOSCAPE-12920 Add CyShutdownRequestedEvent.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] 5ac298: CYTOSCAPE-12933 Update opencl-cycl and opencl-layo...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] d2471c: CYTOSCAPE-12933 Update opencl-cycl and opencl-layo...
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] d8a375: More fixes for CYTOSCAPE-12936 Fix up error messa...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-support] 882aa7: Update osgi dependency.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-parent] a951c7: Set karaf version to 4.3.3.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-impl] d76f42: Update for karaf 4.3.3
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-gui-distribution] cc0fb7: Update to karaf 4.3.3.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape-api] ab1c3e: Update osgi dependency.
'Mike Kucera' via cytoscape-cvs
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[cytoscape/cytoscape.js] 845be4: Add Flowchart.fun & Open Ownership to the who-uses...
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape.js] d74e74: Add Flowchart.fun & Open Ownership to the who-uses...
'Max Franz' via cytoscape-cvs
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[cytoscape/cytoscape-impl] c533bf: Partial fix for CYTOSCAPE-12936. The right fix is...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-impl] 7ec36e: First shot at fixing CYTOSCAPE-12922. Still some ...
'Scooter Morris' via cytoscape-cvs
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[cytoscape/cytoscape-impl] a1d844: CYTOSCAPE-12935 Fix equations that just reference ...
'Mike Kucera' via cytoscape-cvs