Hi Ridvan,
There are certainly a significant number of DAS data sources providing
gene and protein annotations (such as protein-protein interactions as
you say). DAS is particularly well suited to the type of integration
problem you illustrate, in that integrating many disparate data
sources is not a scaleable task without a common data format such as
DAS. However I suspect there is a fair amount not available through
DAS sources, so any approach you take is likely to include other
methods. I suggest you take a look at the data sources in the DAS
Registry (http://www.dasregistry.org/) as a guide to what is
available. I believe MGI may also operate a (genomic) DAS server in
the future but cannot confirm that.
Cheers,
Andy
On 10 Aug 2009, at 16:42, RIDVAN EKSI wrote:
Hello,
I want to have an annotation file that includes everything known
about every genes for mouses. MGI database has a lot of field but it
does not include some parts for example protein-protein interaction.
So a couple of databases should be merged to have this kind of
annotation file. I wonder is it possible with DAS, or is there any
tool that already does that.
Thanks in advance
Ridvan Eksi
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