Congrats on the paper David! Gregg
On Sun, Sep 12, 2010 at 7:12 AM, David Nix <[email protected]> wrote: > Hello Folks, > > I wanted to point folks to our recently published DAS/2 paper, > http://www.biomedcentral.com/1471-2105/11/455 . > > It details three software applications developed for our Microarray/ Next > Generation Sequencing and Bioinformatics Core facilities. One of which is a > web app DAS/2 server that provides, among other things, a user friendly > interface to the Genoviz DAS/2 server and the ability to distribute both > public and private datasets. This is a light weight application that we > hope people will install in their labs and at their institutions and use to > distribute massive genomic datasets. The use of alternative formats, > including several binary file types, accelerates the delivery of genomic > data more than 100x relative to DAS XML. > > Currently, 25 laboratories at the University of Utah are using GenoPub and > the Integrated Genome Browser to distribute and visualize ~1100 genomic > datasets. We are also publically hosting ~600 chIP-chip, chIP-seq, and > transcriptome datasets from a variety of sources including signal and > chIP-seq peak calls from the UCSC ENCODE project and several large chIP-seq > mapping projects (Barski et al. Mikkelsen et al.). > > Here are some relevant links: > > > * Our production server: > http://bioserver.hci.utah.edu:8080/DAS2DB/genopub (guest login: as > "guest", pw: "guest") > * A demo server you can modify: > http://diserafed.hci.utah.edu:8080/das2genopub/genopub (login: > "test.user", pw: "test" > * Our wiki describing how to upload annotations into GenoPub as well as > install your own server: > http://bioserver.hci.utah.edu/BioInfo/index.php/Software:DAS2 > * This software is part of the open source GenoViz project: > http://sourceforge.net/projects/genoviz/ . > > I can also provide folks with temporary user accounts on our production > server if they would rather hold off on instantiating their own DAS/2 > server. > > -cheers, D > > > -- > David Austin Nix, PhD | Bioinformatics Shared Resource | Huntsman Cancer > Institute | 2000 Circle of Hope | SLC, UT 84112 | Rm: 3165 | Vc: > 801.587.4611 | Fx: 801.585.6458 | [email protected] | Skype/iChat: > LiveNix | WebSite: http://bioserver.hci.utah.edu | DAS/2: > http://bioserver.hci.utah.edu:8080/DAS2DB/genome > > _______________________________________________ > DAS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/das > _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
