Hi Dan, Sounds interesting. How do you see that working?
Cheers, Andy On 29 Oct 2010, at 16:28, Dan Bolser wrote: > My thinking was that the DASWiki approach could also support the DAS > writeback extension. > > On 29 October 2010 11:58, Gustavo Adolfo Salazar Orejuela > <[email protected]> wrote: >> Hello There, >> >> I have been working in an extension to DAS1.6 called >> writeback(http://www.biodas.org/wiki/DAS1.6E#DAS_writeback), this will allow >> to create new versions of an existing feature. So, putting new notes into a >> feature is just a creation of a new version of the feature. The server >> implementation of the writeback extends MyDas >> (http://code.google.com/p/mydas/) and you can get a mydas+writebackk >> datasource by SVN (https://mydas.googlecode.com/svn/writeback-datasource). >> We are close to release the plugin for Dasty3 to use the writeback server, >> however this first client is a protein client, and so far there is not a >> development for a genome client with DAS writeback capability, but I am >> quite interested in this. >> I hope to be able to announce the release of the writeback client in Dasty3 >> in a few days, so you will be able to see it working and see if this >> approach goes in the same direction of what you are looking for. >> >> Regards, >> >> Gustavo. >> >> 2010/10/29 Dan Bolser <[email protected]> >>> >>> Hi Bob, >>> >>> This is a nice idea. In my spare time I've been working on running a >>> DAS server from a MediaWiki data source. (MediaWiki is the wiki that >>> runs Wikipedia). >>> >>> In theory, you could have a comments track that was pulled in from the >>> 'DASWiki', and clicking the details link would take you to the wiki >>> page to edit the comment. Going back to the GBrowse, you would then >>> see the updated data from the wiki page. It wouldn't be too hard to >>> have a similar workflow for adding new comments. >>> >>> I saw a talk from some people at KeyGene who are doing something >>> similar (loading DAS into a wiki and linking it to GBrowse to generate >>> query reports for specific regions). You can see the talk here: >>> >>> SMWCon Fall 2010 / Sunday / Rudi van Bavel >>> * http://semantic-mediawiki.org/wiki/SMWCon_Fall_2010#Program >>> ** https://docs.google.com/present/view?id=dg56kh6m_344gh2dg72g >>> ** >>> http://srv-hrl-32.web.pwo.ou.nl//informatica/SMWCon/Van%20Bavel%20bulk%20loading.wmv >>> >>> >>> If anyone wants to take what I have done so far, my (sadly neglected) >>> prototype is here: >>> >>> http://das.referata.com/wiki/Main_Page >>> >>> >>> Kick me a few times and I'll get the underlying code into shape. A >>> year or two back I did have a working prototype based on a MediaWiki >>> ProServer adaptor. >>> >>> >>> If you are interested in community annotation should think about attending >>> this: >>> >>> Joint NETTAB 2010 and BBCC 2010 workshops focused on Biological Wikis: >>> http://www.nettab.org/2010/ >>> >>> >>> Cheers, >>> Dan. >>> >>> On 26 October 2010 20:31, Bob Muller <[email protected]> wrote: >>>> We are working with a small research project that doesn't have funds for >>>> a full-scale database for features, so they want to know: >>>> >>>> How difficult would it be to add a comment section editable by users to >>>> gbrowse? When you click on a feature in gbrowse it shows a detail page for >>>> that feature, is there any way we could enable edits that could be written >>>> back to the underlying mysql database that gbrowse runs on? >>>> >>>> Their idea is to use the SeqFeature::Store database to hold "comments" >>>> entered through GBrowse as a way to annotate their genome. I'd be >>>> interested >>>> in whether this is possible in GBrowse 1.7 or in 2.x. >>>> >>>> --Bob Muller, TAIR (www.arabidopsis.org) >>>> >>>> >>>> ------------------------------------------------------------------------------ >>>> Nokia and AT&T present the 2010 Calling All Innovators-North America >>>> contest >>>> Create new apps & games for the Nokia N8 for consumers in U.S. and >>>> Canada >>>> $10 million total in prizes - $4M cash, 500 devices, nearly $6M in >>>> marketing >>>> Develop with Nokia Qt SDK, Web Runtime, or Java and Publish to Ovi Store >>>> http://p.sf.net/sfu/nokia-dev2dev >>>> _______________________________________________ >>>> Gmod-gbrowse mailing list >>>> [email protected] >>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse >>>> >>> >>> _______________________________________________ >>> DAS mailing list >>> [email protected] >>> http://lists.open-bio.org/mailman/listinfo/das >> >> >> >> -- >> Gustavo Adolfo Salazar Orejuela >> > > _______________________________________________ > DAS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/das _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
