Hi Chris, The 'reference' Ensembl sources are suitable for use as mapmasters, as they provide sequence information: http://plants.ensembl.org/das/Arabidopsis_thaliana.TAIR10.reference/entry_points http://plants.ensembl.org/das/Arabidopsis_thaliana.TAIR10.reference/sequence?segment=1:1,100
So, barring any particular nuance of IGB, the correct mapmaster URL would be: http://plants.ensembl.org/das/Arabidopsis_thaliana.TAIR10.reference (assuming thaliana) The reason for all this is I guess that IGB does not support the DAS 1.53E/1.6 sources command, which provides species and coordinate information directly. Cheers, Andy On 7 Feb 2011, at 10:34, Chris Cole wrote: > Hi, > > I have a functioning ProServer install that works fine with Ensembl, but I'd > like to get it working with IGB as well. However, it fails to load as it has > a 'Missing MAPMASTER element'. I see I need to specify a URI to a known > MAPMASTER source, but I've no idea how. > > The server is for Arabidopsis data and I've found the Ensembl DAS sources for > plants, but which can I use as a mapmaster? > http://plants.ensembl.org/das/dsn > Or am I barking up the wrong tree? > > Any pointers much appreciated. > Cheers, > > Chris > > > _______________________________________________ > DAS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/das _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
