Ah, interesting. I'm exercising my implementations of the das commands, and then validating the XML against the rng as a correctness test. I had been assuming that the rng was a description of all possible server responses, including error cases, but I now see what you guys are using them for.
Thanks! On Mar 1, 2011, at 10:54 AM, Jonathan Warren <[email protected]> wrote: > Hi Andrew > > I guess this depends on what you are using the RNG for. What are you using it > for? The registry needs the result from a sequence request to conform to the > sequence.rng as it is on the registry as if a sequence is requested the test > region put into the registry should return a sequence, if it returns an > ERRORSEGMENT the the registry wants that reported as invalid. If I add the > errorsegment to that document as you suggest the registry won't pick it up as > invalid. > > On 1 Mar 2011, at 15:19, Andrew Roberts wrote: > >> Alright, now I'm hitting the lack of support for ERRORSEGMENT within the >> sequence command response. I think there needs to be a choice inside the >> oneOrMore, so that elements can be SEQUENCE or ERRORSEGMENT. I attached >> what I'm using as a testing schema in the meantime, hopefully it's helpful. >> >> Andrew >> <sequence.rng> >> >> >> On Mar 1, 2011, at 5:09 AM, Jonathan Warren wrote: >> >>> This is fixed now. >>> >>> On 28 Feb 2011, at 18:34, Andrew Roberts wrote: >>> >>>> Hello, >>>> >>>> I'm working on some validations, and I think I may have found an error >>>> in sequence.rng (www.dasregistry.org/validation1.6/sequence.rng). It >>>> appears that this schema makes no provision for the actual text data that >>>> belongs to the sequence element (i.e. the bases themselves). Is this a >>>> known issue? >>>> >>>> If not, I think the solution is to add a <text/> element inside the >>>> sequence element. Line 10 should read, >>>> >>>> <attribute name="start"><data >>>> type="integer"></data></attribute><attribute name="stop"><data >>>> type="integer"></data></attribute><optional><attribute >>>> name="version"><text></text></attribute></optional><optional><attribute >>>> name="label"><text></text></attribute></optional><text/></element> >>>> >>>> Cheers, >>>> >>>> Andrew >>>> _______________________________________________ >>>> DAS mailing list >>>> [email protected] >>>> http://lists.open-bio.org/mailman/listinfo/das >>> >>> Jonathan Warren >>> Senior Developer and DAS coordinator >>> blog: http://biodasman.wordpress.com/ >>> [email protected] >>> Ext: 2314 >>> Telephone: 01223 492314 >>> >>> >>> >>> >>> >>> >>> >>> >>> >>> -- >>> The Wellcome Trust Sanger Institute is operated by Genome ResearchLimited, >>> a charity registered in England with number 1021457 and acompany registered >>> in England with number 2742969, whose registeredoffice is 215 Euston Road, >>> London, NW1 2BE. >> > > Jonathan Warren > Senior Developer and DAS coordinator > blog: http://biodasman.wordpress.com/ > [email protected] > Ext: 2314 > Telephone: 01223 492314 > > > > > > > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome ResearchLimited, a > charity registered in England with number 1021457 and acompany registered in > England with number 2742969, whose registeredoffice is 215 Euston Road, > London, NW1 2BE. _______________________________________________ DAS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/das
