Hi all,
I got this email from a MyDas user but his questions are related to
Dalliance and my experience there is limited. Maybe someone else in the
list could suggest something about the problems he is facing?
Cheers,
---------- Forwarded message ----------
From: *Pelz, Oliver* <[email protected]
<mailto:[email protected]>>
Date: Wed, Jul 18, 2012 at 1:40 PM
Subject: Problems with myDAS parameters
To: "[email protected] <mailto:[email protected]>"
<[email protected] <mailto:[email protected]>>,
"[email protected]
<mailto:[email protected]>"
<[email protected]
<mailto:[email protected]>>, "[email protected]
<mailto:[email protected]>" <[email protected]
<mailto:[email protected]>>, "Schmidt, Esther"
<[email protected] <mailto:[email protected]>>
Dear you,
First I want to say that I asked this questions in biodas mailing list
but did not get any reply so I am writing you.
I am just setting up a simple DAS source using the MyDAS java
implementation but have problems with the type parameter.
If I use a simple request:
http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiHumanReagentDatasource/features?segment=6:133119869,133155732
It works fine.
The Dalliance GenomeBrowser 0.7.0pre4 adds the types parmaeter :
http://genomernai.de/DASGenomeRNAi/das/GenomeRNAiHumanReagentDatasource/features?segment=6:133119869,133155732;type=RNAi%20reagent;type=RNAi%20phenotype;
This will filter out all results returning zero results.
I have debugged my mydas code and the method
public DasAnnotatedSegment getFeatures(String segmentId, int start, int
stop, Integer maxbins) in my RangeHandlingAnnotationDataSource
implementation returns the results correctly.
Somehow after this step the filtering out occurs which I cannot influence.
Is there a way to adjust this in my MyDAS java code or can I disable
type parameters in Dalliance?
Thank you for your help
Oliver
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