Hi Toby What happens if you run the deal.ii regression test suite (just the petsc part)? This might help identify what is failing and where.
Regards Andrew On 28 Aug 2010, at 4:20 PM, Toby D. Young wrote: > > Hello, > > I'm trying to run step-36 and it bails out with a message I can't track. > The error message is below. I've tried various petsc and slepc versions > (including petsc-dev and slepc-dev). They *all* report the same > problem. The complete error message is posted below. The most interesting > line is this one: > > [0]PETSC ERROR: Corrupt argument: see > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Corrupt! > [0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have > inner MPI_Comm! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > > Up to now I can only say that matrices and vectors report the same error > with VecDestroy() or MatDestroy(). I get the same error compiling with > mpicxx and gcc (ie. with and without MPI). I get the same error with > PETScWrappers::Vector and PETScWrappers::MPI::Vector.... > > Something changed in dealii-dev the last few days only. I am sure this > has nothing to do with the PETScWrappers nor the SLEPcWrappers. So why > does this change *not* affect on step-17 (which uses petsc)? Any ideas? > Did something change with MPI_Comm? Or is this something to do with > multi-threading? > > It makes no sense that a petsc example (step-17) is ok but a slepc example > (step-36) is not. They actually use the same objects, only the solver base > is different.... > > This is too weird for me; I am completely clueless. > > Thanks in advance. > > Best, > Toby > > ============================ Remaking Makefile.dep > ==============debug========= step-36.cc > ============================ Linking step-36 > tyo...@maly:~/research.code/deal.II/examples/step-36$ ./step-36 > Number of active cells: 1024 > Number of degrees of freedom: 1089 > > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: Corrupt argument: see > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Corrupt! > [0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have > inner MPI_Comm! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 4, Fri Jul 30 14:42:02 > CDT 2010 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./step-36 on a linux-gnu named maly by tyoung Sat Aug 28 > 16:03:24 2010 > [0]PETSC ERROR: Libraries linked from > /home/tyoung/research.code/petsc-3.1-p4/linux-gnu-cxx-opt/lib > [0]PETSC ERROR: Configure run at Sat Aug 28 13:55:56 2010 > [0]PETSC ERROR: Configure options --with-mpi=0 --with-shared=1 --with-x=0 > --with-debugging=0 --with-clanguage=C++ > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscCommDestroy() line 239 in src/sys/objects/tagm.c > [0]PETSC ERROR: PetscHeaderDestroy_Private() line 75 in > src/sys/objects/inherit.c > [0]PETSC ERROR: PCDestroy() line 90 in src/ksp/pc/interface/precon.c > [0]PETSC ERROR: KSPDestroy() line 695 in src/ksp/ksp/interface/itfunc.c > [0]PETSC ERROR: STDestroy() line 127 in src/st/interface/stfunc.c > [0]PETSC ERROR: EPSDestroy() line 589 in src/eps/interface/basic.c > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: Corrupt argument: see > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Corrupt! > [0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have > inner MPI_Comm! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 4, Fri Jul 30 14:42:02 > CDT 2010 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./step-36 on a linux-gnu named maly by tyoung Sat Aug 28 > 16:03:24 2010 > [0]PETSC ERROR: Libraries linked from > /home/tyoung/research.code/petsc-3.1-p4/linux-gnu-cxx-opt/lib > [0]PETSC ERROR: Configure run at Sat Aug 28 13:55:56 2010 > [0]PETSC ERROR: Configure options --with-mpi=0 --with-shared=1 --with-x=0 > --with-debugging=0 --with-clanguage=C++ > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscCommDestroy() line 239 in src/sys/objects/tagm.c > [0]PETSC ERROR: PetscHeaderDestroy_Private() line 75 in > src/sys/objects/inherit.c > [0]PETSC ERROR: VecDestroy() line 530 in src/vec/vec/interface/vector.c > [0]PETSC ERROR: --------------------- Error Message > ------------------------------------ > [0]PETSC ERROR: Corrupt argument: see > http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Corrupt! > [0]PETSC ERROR: MPI_Comm does not have tag/name counter nor does it have > inner MPI_Comm! > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 4, Fri Jul 30 14:42:02 > CDT 2010 > [0]PETSC ERROR: See docs/changes/index.html for recent updates. > [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting. > [0]PETSC ERROR: See docs/index.html for manual pages. > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: ./step-36 on a linux-gnu named maly by tyoung Sat Aug 28 > 16:03:24 2010 > [0]PETSC ERROR: Libraries linked from > /home/tyoung/research.code/petsc-3.1-p4/linux-gnu-cxx-opt/lib > [0]PETSC ERROR: Configure run at Sat Aug 28 13:55:56 2010 > [0]PETSC ERROR: Configure options --with-mpi=0 --with-shared=1 --with-x=0 > --with-debugging=0 --with-clanguage=C++ > [0]PETSC ERROR: > ------------------------------------------------------------------------ > [0]PETSC ERROR: PetscCommDestroy() line 239 in src/sys/objects/tagm.c > [0]PETSC ERROR: PetscHeaderDestroy_Private() line 75 in > src/sys/objects/inherit.c > [0]PETSC ERROR: MatDestroy() line 888 in src/mat/interface/matrix.c > terminate called after throwing an instance of > 'dealii::PETScWrappers::MatrixBase::ExcPETScError' > what(): -------------------------------------------------------- > An error occurred in line <94> of file > </home/tyoung/research.code/deal.II/lac/source/petsc_matrix_base.cc> in > function > virtual dealii::PETScWrappers::MatrixBase::~MatrixBase() > The violated condition was: > ierr == 0 > The name and call sequence of the exception was: > ExcPETScError(ierr) > Additional Information: > An error with error number 1 occured while calling a PETSc function > -------------------------------------------------------- > > Aborted > > > > > ----- > > Toby D. Young > Assistant Professor > > Institute of Fundamental Technological Problems > Polish Academy of Sciences > ul Adolfa Pawinskiego 5b > 02-106 Warsaw > Poland > > www: http://www.ippt.gov.pl/~tyoung > skype: stenografia > > _______________________________________________ > dealii mailing list http://poisson.dealii.org/mailman/listinfo/dealii _______________________________________________ dealii mailing list http://poisson.dealii.org/mailman/listinfo/dealii
