Problem building examples with petsc variables not being sourced. We have our kitchensink build of petsc we provide to our users, I can configure deal against it, but when building the examples linking fails because the $PETSC/conf/variables is not getting read correctly. There isn't an error about it, just the linking for external libraries like HDF5/parmetis etc that petsc requires are not being included so I get tones of 'undefined reference to'
I have pasted my (nasty) configure below. Any idea what would cause this to fail? Its strange I see that it is included in $DEAL/common/Make.global_options CXX=mpiCC CC=mpicc CPPFLAGS=-I$HDF5_INC LDFLAGS=-L$UMFPACK_LINK ./configure --enable-mpi --with-petsc=/home/software/rhel5/petsc/3.0.0-p7/intel/opt/ --with-petsc-arch= --disable-threads --disable-shared --with-trilinos=$TRILINOS_ROOT --with-metis=$METIS_ROOT/metis-4.0.3 --with-blas=" -Wl,--start-group $MKLROOT/lib/intel64/libmkl_intel_lp64.a $MKLROOT/lib/intel64/libmkl_sequential.a $MKLROOT/lib/intel64/libmkl_core.a -Wl,--end-group -lpthread" --with-lapack=" -Wl,--start-group $MKLROOT/lib/intel64/libmkl_intel_lp64.a $MKLROOT/lib/intel64/libmkl_sequential.a $MKLROOT/lib/intel64/libmkl_core.a -Wl,--end-group -lpthread" --with-umfpack-include=$UMFPACK_INC --with-umfpack-libs=$UMFPACK_LINK --with-slepc=$SLEPC_ROOT Brock Palen www.umich.edu/~brockp Center for Advanced Computing [email protected] (734)936-1985 _______________________________________________ dealii mailing list http://poisson.dealii.org/mailman/listinfo/dealii
