Dear Timo and Uwe,
I am getting a string of errors associated with constraint_matrix files when I
run "./reconfigure && make clean && make all" after doing the svn checkout. I
have pasted these below (long!)
Any idea of what I need to do to fix this would be really great!
Many thanks
Katie Leonard
In file included from /home/katie/deal.II/source/lac/constraint_matrix.cc:15:0:
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.templates.h:2199:1:
error: prototype for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&, bool,
dealii::internal::bool2type<false>) const’ does not match any in class
‘dealii::ConstraintMatrix’
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1670:5: error:
candidates are: template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&,
dealii::internal::bool2type<true>) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1656:5: error:
template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&,
dealii::internal::bool2type<false>) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1183:5: error:
template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1162:5: error:
template<class MatrixType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const std::vector<unsigned int>&, const
std::vector<unsigned int>&, MatrixType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1151:5: error:
template<class MatrixType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const std::vector<unsigned int>&, MatrixType&)
const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1077:5: error:
template<class ForwardIteratorVec, class ForwardIteratorInd, class
VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(ForwardIteratorVec,
ForwardIteratorVec, ForwardIteratorInd, VectorType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1027:5: error:
template<class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::Vector<double>&, const std::vector<unsigned int>&, VectorType&, const
dealii::FullMatrix<double>&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:950:5: error:
template<class InVector, class OutVector> void
dealii::ConstraintMatrix::distribute_local_to_global(const InVector&, const
std::vector<unsigned int>&, OutVector&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.templates.h:2361:1:
error: prototype for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&, bool,
dealii::internal::bool2type<true>) const’ does not match any in class
‘dealii::ConstraintMatrix’
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1670:5: error:
candidates are: template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&,
dealii::internal::bool2type<true>) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1656:5: error:
template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&,
dealii::internal::bool2type<false>) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1183:5: error:
template<class MatrixType, class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, MatrixType&, VectorType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1162:5: error:
template<class MatrixType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const std::vector<unsigned int>&, const
std::vector<unsigned int>&, MatrixType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1151:5: error:
template<class MatrixType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const std::vector<unsigned int>&, MatrixType&)
const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1077:5: error:
template<class ForwardIteratorVec, class ForwardIteratorInd, class
VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(ForwardIteratorVec,
ForwardIteratorVec, ForwardIteratorInd, VectorType&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:1027:5: error:
template<class VectorType> void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::Vector<double>&, const std::vector<unsigned int>&, VectorType&, const
dealii::FullMatrix<double>&) const
/home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:950:5: error:
template<class InVector, class OutVector> void
dealii::ConstraintMatrix::distribute_local_to_global(const InVector&, const
std::vector<unsigned int>&, OutVector&) const
/home/katie/deal.II/source/lac/constraint_matrix.cc:2332:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrix<double>,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrix<double>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2333:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrix<float>, dealii::Vector<double>
>’ for ‘void dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrix<float>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2334:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrix<float>, dealii::Vector<float>
>’ for ‘void dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrix<float>&,
dealii::Vector<float>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2336:1: error: template-id
‘distribute_local_to_global<dealii::BlockSparseMatrix<double>,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::BlockSparseMatrix<double>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<true>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2337:1: error: template-id
‘distribute_local_to_global<dealii::BlockSparseMatrix<float>,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::BlockSparseMatrix<float>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<true>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2338:1: error: template-id
‘distribute_local_to_global<dealii::BlockSparseMatrix<double>,
dealii::BlockVector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::BlockSparseMatrix<double>&,
dealii::BlockVector<double>&, bool, dealii::internal::bool2type<true>) const’
does not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2339:1: error: template-id
‘distribute_local_to_global<dealii::BlockSparseMatrix<float>,
dealii::BlockVector<float> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::BlockSparseMatrix<float>&,
dealii::BlockVector<float>&, bool, dealii::internal::bool2type<true>) const’
does not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2340:1: error: template-id
‘distribute_local_to_global<dealii::BlockSparseMatrix<float>,
dealii::BlockVector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::BlockSparseMatrix<float>&,
dealii::BlockVector<double>&, bool, dealii::internal::bool2type<true>) const’
does not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2342:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrixEZ<double>,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrixEZ<double>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2343:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrixEZ<float>,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrixEZ<float>&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2344:1: error: template-id
‘distribute_local_to_global<dealii::SparseMatrixEZ<float>,
dealii::Vector<float> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::SparseMatrixEZ<float>&,
dealii::Vector<float>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2361:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::SparseMatrix,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::SparseMatrix&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<false>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2362:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
dealii::Vector<double> >’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::BlockSparseMatrix&,
dealii::Vector<double>&, bool, dealii::internal::bool2type<true>) const’ does
not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2363:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::SparseMatrix,
dealii::TrilinosWrappers::Vector>’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::SparseMatrix&,
dealii::TrilinosWrappers::Vector&, bool, dealii::internal::bool2type<false>)
const’ does not match any template declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2364:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
dealii::TrilinosWrappers::BlockVector>’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::BlockSparseMatrix&,
dealii::TrilinosWrappers::BlockVector&, bool,
dealii::internal::bool2type<true>) const’ does not match any template
declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2365:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::SparseMatrix,
dealii::TrilinosWrappers::MPI::Vector>’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::SparseMatrix&,
dealii::TrilinosWrappers::MPI::Vector&, bool,
dealii::internal::bool2type<false>) const’ does not match any template
declaration
/home/katie/deal.II/source/lac/constraint_matrix.cc:2366:1: error: template-id
‘distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
dealii::TrilinosWrappers::MPI::BlockVector>’ for ‘void
dealii::ConstraintMatrix::distribute_local_to_global(const
dealii::FullMatrix<double>&, const dealii::Vector<double>&, const
std::vector<unsigned int>&, dealii::TrilinosWrappers::BlockSparseMatrix&,
dealii::TrilinosWrappers::MPI::BlockVector&, bool,
dealii::internal::bool2type<true>) const’ does not match any template
declaration
make[1]: *** [/home/katie/deal.II/lib/debug/lac_constraint_matrix.o] Error 1
make[1]: Leaving directory `/home/katie/deal.II/source'
make: *** [debug] Error 2
DPhil student in Computational Biology,
The University of Oxford.
________________________________________
From: Timo Heister [[email protected]]
Sent: 20 February 2012 03:58
To: Katie Leonard
Cc: [email protected]
Subject: Re: [deal.II] Checkout through Svn now giving a compile error for
DoFTools::count_dofs_per_block
Hi Katie,
do the steps included in the deal svn compile correctly for you? For
me they do right now. If not, you might need to "./reconfigure && make
clean && make all".
Let us know if that didn't help.
On Sun, Feb 19, 2012 at 6:16 PM, Katie Leonard
<[email protected]> wrote:
> Hi,
>
> I have just done a svn checkout to get some changes made since the last
> version was released. I have just compiled some of my code that worked fine
> before the checkout, and I got an error that I'm not sure how to fix! The
> error output is:
>
> undefined reference to `void
> dealii::DoFTools::count_dofs_per_block<dealii::DoFHandler<2, 2>
> >(dealii::DoFHandler<2, 2> const&, std::vector<unsigned int,
> std::allocator<unsigned int> >&, std::vector<unsigned int,
> std::allocator<unsigned int> >)'
> collect2: ld returned 1 exit status
> make: *** [step-31] Error 1
>
>
> If someone could give me an idea of where the error may be originating from,
> that would be really helpful :)
>
>
> There was also a problem with the file
> deal.II/include/deal.II/lac/constraint_matrix.h which I fixed by reverting to
> the original (I have pasted the error message for that below, just in case
> anyone is interested!)
>
> Hope I've posted this to the correct list - please do excuse me if I haven't!
>
> Thanks,
>
> Katie Leonard
>
>
> error message with svn version of
> deal.II/include/deal.II/lac/constraint_matrix.h :
>
> void
> dealii::ConstraintMatrix::distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
> dealii::TrilinosWrappers::BlockVector>(dealii::FullMatrix<double> const&,
> dealii::Vector<double> const&, std::vector<unsigned int,
> std::allocator<unsigned int> > const&,
> dealii::TrilinosWrappers::BlockSparseMatrix&,
> dealii::TrilinosWrappers::BlockVector&, bool) const':
> /home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:2076: undefined
> reference to `void
> dealii::ConstraintMatrix::distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
> dealii::TrilinosWrappers::BlockVector>(dealii::FullMatrix<double> const&,
> dealii::Vector<double> const&, std::vector<unsigned int,
> std::allocator<unsigned int> > const&,
> dealii::TrilinosWrappers::BlockSparseMatrix&,
> dealii::TrilinosWrappers::BlockVector&, bool,
> dealii::internal::bool2type<true>) const'
> step-31.g.o: In function `void
> dealii::ConstraintMatrix::distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix>(dealii::FullMatrix<double>
> const&, std::vector<unsigned int, std::allocator<unsigned int> > const&,
> dealii::TrilinosWrappers::BlockSparseMatrix&) const':
> /home/katie/deal.II/include/deal.II/lac/constraint_matrix.h:2054: undefined
> reference to `void
> dealii::ConstraintMatrix::distribute_local_to_global<dealii::TrilinosWrappers::BlockSparseMatrix,
> dealii::Vector<double> >(dealii::FullMatrix<double> const&,
> dealii::Vector<double> const&, std::vector<unsigned int,
> std::allocator<unsigned int> > const&,
> dealii::TrilinosWrappers::BlockSparseMatrix&, dealii::Vector<double>&, bool,
> dealii::internal::bool2type<true>) const'
>
>
>
>
>
>
> DPhil student in Computational Biology,
> The University of Oxford.
> _______________________________________________
> dealii mailing list http://poisson.dealii.org/mailman/listinfo/dealii
--
Timo Heister
http://www.math.tamu.edu/~heister/
_______________________________________________
dealii mailing list http://poisson.dealii.org/mailman/listinfo/dealii
