Hello deal.ii users,
I'm having trouble building dealii 8.4.2 with p4est support on OpenSUSE
Leap 42.2, kernel 4.4.27-2-default, gcc/g++/gfortran version 4.8.5, openmpi
1.10.3 (MPI 3.0)
I have successfully built deal.ii with MPI, PETSC, and METIS support and
ran a few examples without a problem. Then I noticed that for few of the
example problems, Trilinos and/or p4est also required, so I built version
12.10.1 of Trilinos from source as well as versions 0.3.4.1 - 1.1 of p4est
using the steps contained in the deal.ii README which worked fine - now the
problem is building deal.ii
I used the following command successfully to build dealii (note Trilinos
and p4est are OFF)
> rm -rf * && \
cmake \
-DDEAL_II_WITH_MPI:BOOL=ON \
-DDEAL_II_WITH_PETSC:BOOL=ON \
-DDEAL_II_WITH_TRILINOS:BOOL=ON \
-DDEAL_II_WITH_METIS:BOOL=ON \
-DDEAL_II_WITH_P4EST:BOOL=OFF \
-DCMAKE_INSTALL_PREFIX:FILEPATH=/home/redclient04/Software/INSTALL \
.. 2>&1 | tee cmake.log && \
make -j20 2>&1 | tee make.log && \
make test 2>&1 | tee test.log
With only p4est enabled, and P4EST_DIR pointing to the DEBUG folder of
version 0.3.4.1, I get the following errors associated with undeclared
variables in scope. The rest of the output can be found in the attached
make.log:
.
.
[ 32%] Building CXX object source/fe/CMakeFiles/obj_fe.debug.dir/fe.cc.o
/home/redclient04/Software/dealii/source/distributed/tria.cc:302:9: error:
‘p4est_connectivity_join_faces’ was not declared in this scope
= p4est_connectivity_join_faces;
^
/home/redclient04/Software/dealii/source/distributed/tria.cc:677:9: error:
‘p8est_connectivity_join_faces’ was not declared in this scope
= p8est_connectivity_join_faces;
^
.
.
There seems to be an error in how I installed p4est, but I just downloaded
the released tarballs and used the dealii script (link
<https://www.dealii.org/developer/external-libs/p4est-setup.sh>) to install
it on my system. I tried building deal with p4est versions 0.3.4.1 - 1.1.
Although some were more verbose than others, they all gave more or less the
same error - some variable not being declared in the scope. Specifically,
the command I used to build p4est 0.3.4.1 is:
> ./p4est-setup-dealii.sh p4est-0.3.4.1.tar.gz /home/redclient04/Software/
p4est/p4est-0.3.4.1
> export P4EST_DIR=/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG
Can anyone give me an idea of what may have gone wrong in my workflow?
A quick rundown of what cmake was able to put together can be see in this
summary. A more detailed output of cmake is attached as cmake.log
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/redclient04/Software/INSTALL
# CMAKE_SOURCE_DIR: /home/redclient04/Software/dealii
# (version 8.4.2, shortrev 0752c81)
# CMAKE_BINARY_DIR: /home/redclient04/Software/dealii/build5
# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON,
DEAL_II_ALLOW_AUTODETECTION = ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ARPACK set up with external dependencies
# DEAL_II_WITH_BOOST set up with external dependencies
# DEAL_II_WITH_BZIP2 set up with external dependencies
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# DEAL_II_WITH_LAPACK set up with external dependencies
# DEAL_II_WITH_METIS set up with external dependencies
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with external dependencies
# DEAL_II_WITH_NETCDF set up with external dependencies
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# DEAL_II_WITH_PETSC set up with external dependencies
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with external dependencies
# DEAL_II_WITH_TRILINOS set up with external dependencies
# DEAL_II_WITH_UMFPACK set up with external dependencies
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be
found in detailed.log
#
# Run $ make info to print a help message with a list of top level
targets
#
###
Any advice would be much appreciated.
Cheers,
Chris
--
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
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^
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^
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/home/redclient04/Software/dealii/cmake/macros/macro_reset_cmake_required.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_set_if_empty.cmake
-- Include /home/redclient04/Software/dealii/cmake/macros/macro_strip_flag.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_switch_library_preference.cmake
-- Include /home/redclient04/Software/dealii/cmake/macros/macro_to_string.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_to_string_and_add_prefix.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_verbose_include.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_configure_feature.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_add_library.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_add_test.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_pickup_tests.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_deal_ii_setup_target.cmake
-- Include
/home/redclient04/Software/dealii/cmake/macros/macro_expand_instantiations.cmake
--
-- Include /home/redclient04/Software/dealii/cmake/setup_cached_variables.cmake
-- The CXX compiler identification is GNU 4.8.5
-- The C compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- The Fortran compiler identification is GNU 4.8.5
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
--
-- Include /home/redclient04/Software/dealii/cmake/setup_deal_ii.cmake
--
-- Include /home/redclient04/Software/dealii/cmake/setup_compiler_flags.cmake
--
-- Include
/home/redclient04/Software/dealii/cmake/setup_compiler_flags_gnu.cmake
-- Performing Test DEAL_II_HAVE_FLAG_pedantic
-- Performing Test DEAL_II_HAVE_FLAG_pedantic - Success
-- Performing Test DEAL_II_HAVE_FLAG_fPIC
-- Performing Test DEAL_II_HAVE_FLAG_fPIC - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed
-- Performing Test DEAL_II_HAVE_FLAG_Wl__as_needed - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wall
-- Performing Test DEAL_II_HAVE_FLAG_Wall - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wextra
-- Performing Test DEAL_II_HAVE_FLAG_Wextra - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith
-- Performing Test DEAL_II_HAVE_FLAG_Wpointer_arith - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings
-- Performing Test DEAL_II_HAVE_FLAG_Wwrite_strings - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth
-- Performing Test DEAL_II_HAVE_FLAG_Wsynth - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare
-- Performing Test DEAL_II_HAVE_FLAG_Wsign_compare - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch
-- Performing Test DEAL_II_HAVE_FLAG_Wswitch - Success
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual
-- Performing Test DEAL_II_HAVE_FLAG_Woverloaded_virtual - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long
-- Performing Test DEAL_II_HAVE_FLAG_Wlong_long - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations
-- Performing Test DEAL_II_HAVE_FLAG_Wdeprecated_declarations - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix
-- Performing Test DEAL_II_HAVE_FLAG_Wliteral_suffix - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops
-- Performing Test DEAL_II_HAVE_FLAG_funroll_all_loops - Success
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing
-- Performing Test DEAL_II_HAVE_FLAG_fstrict_aliasing - Success
-- Performing Test DEAL_II_HAVE_FLAG_Og
-- Performing Test DEAL_II_HAVE_FLAG_Og - Success
-- Performing Test DEAL_II_HAVE_FLAG_ggdb
-- Performing Test DEAL_II_HAVE_FLAG_ggdb - Success
--
-- Include /home/redclient04/Software/dealii/bundled/setup_bundled.cmake
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_01_compiler_features.cmake
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS
-- Performing Test DEAL_II_COMPILER_USE_VECTOR_ARITHMETICS - Success
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK
-- Performing Test DEAL_II_VECTOR_ITERATOR_IS_POINTER_OK - Success
-- Test successful, do not define DEAL_II_VECTOR_ITERATOR_IS_POINTER
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT
-- Performing Test DEAL_II_HAVE_BUILTIN_EXPECT - Success
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE
-- Performing Test DEAL_II_HAVE_VERBOSE_TERMINATE - Success
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE
-- Performing Test DEAL_II_HAVE_GLIBC_STACKTRACE - Success
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic
-- Performing Test DEAL_II_HAVE_FLAG_rdynamic - Success
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER
-- Performing Test DEAL_II_HAVE_LIBSTDCXX_DEMANGLER - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_PRETTY_FUNCTION - Success
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections
-- Performing Test DEAL_II_HAVE_FLAG_Wa__compress_debug_sections - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_DEPRECATED - Success
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE
-- Performing Test DEAL_II_COMPILER_HAS_ATTRIBUTE_ALWAYS_INLINE - Success
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA
-- Performing Test DEAL_II_COMPILER_HAS_DIAGNOSTIC_PRAGMA - Success
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD
-- Performing Test DEAL_II_COMPILER_HAS_FUSE_LD_GOLD - Failed
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_01_cpu_features.cmake
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Performing Test DEAL_II_HAVE_SSE2
-- Performing Test DEAL_II_HAVE_SSE2 - Success
-- Performing Test DEAL_II_HAVE_AVX
-- Performing Test DEAL_II_HAVE_AVX - Failed
-- Performing Test DEAL_II_HAVE_AVX512
-- Performing Test DEAL_II_HAVE_AVX512 - Failed
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD
-- Performing Test DEAL_II_HAVE_OPENMP_SIMD - Failed
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_01_cxx_features.cmake
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx14 - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx1y - Success
-- Using C++ version flag "-std=c++1y"
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE
-- Performing Test DEAL_II_HAVE_CXX14_MAKE_UNIQUE - Failed
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK
-- Performing Test DEAL_II_HAVE_CXX14_CLANGAUTODEBUG_BUG_OK - Failed
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11
-- Performing Test DEAL_II_HAVE_FLAG_stdcxx11 - Success
-- Using C++ version flag "-std=c++11"
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY
-- Performing Test DEAL_II_HAVE_CXX11_ARRAY - Success
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE
-- Performing Test DEAL_II_HAVE_CXX11_CONDITION_VARIABLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_GCCBUG35569_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK
-- Performing Test DEAL_II_HAVE_CXX11_FUNCTIONAL_LLVMBUG20084_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR
-- Performing Test DEAL_II_HAVE_CXX11_SHARED_PTR - Success
-- Performing Test DEAL_II_HAVE_CXX11_THREAD
-- Performing Test DEAL_II_HAVE_CXX11_THREAD - Success
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX
-- Performing Test DEAL_II_HAVE_CXX11_MUTEX - Success
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE
-- Performing Test DEAL_II_HAVE_CXX11_TUPLE - Success
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS
-- Performing Test DEAL_II_HAVE_CXX11_TYPE_TRAITS - Success
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_MACOSXC99BUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCNUMERICLIMITSBUG_OK - Success
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK
-- Performing Test DEAL_II_HAVE_CXX11_ICCLIBSTDCPP47CXX11BUG_OK - Success
-- DEAL_II_WITH_CXX11 successfully set up
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE
-- Performing Test DEAL_II_HAVE_CXX11_IS_TRIVIALLY_COPYABLE - Failed
-- Performing Test DEAL_II_HAVE_STD_ISNAN
-- Performing Test DEAL_II_HAVE_STD_ISNAN - Success
-- Performing Test DEAL_II_HAVE_ISNAN
-- Performing Test DEAL_II_HAVE_ISNAN - Success
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN
-- Performing Test DEAL_II_HAVE_UNDERSCORE_ISNAN - Failed
-- Performing Test DEAL_II_HAVE_ISFINITE
-- Performing Test DEAL_II_HAVE_ISFINITE - Success
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS
-- Performing Test DEAL_II_HAVE_FP_EXCEPTIONS - Success
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS
-- Performing Test DEAL_II_HAVE_COMPLEX_OPERATOR_OVERLOADS - Failed
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_02_system_features.cmake
-- Looking for C++ include sys/resource.h
-- Looking for C++ include sys/resource.h - found
-- Looking for C++ include sys/time.h
-- Looking for C++ include sys/time.h - found
-- Looking for C++ include sys/times.h
-- Looking for C++ include sys/times.h - found
-- Looking for times
-- Looking for times - found
-- Looking for C++ include sys/types.h
-- Looking for C++ include sys/types.h - found
-- Looking for C++ include unistd.h
-- Looking for C++ include unistd.h - found
-- Looking for gethostname
-- Looking for gethostname - found
-- Looking for getpid
-- Looking for getpid - found
-- Performing Test m_LIBRARY
-- Performing Test m_LIBRARY - Success
-- Looking for jn
-- Looking for jn - found
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_03_compiler_bugs.cmake
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_WRETURN_TYPE_CONST_QUALIFIER_BUG
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK
-- Performing Test DEAL_II_TEMPL_SPEC_FRIEND_BUG_OK - Success
-- Test successful, do not define DEAL_II_TEMPL_SPEC_FRIEND_BUG
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_ARRAY_SPECIALIZATION_BUG
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK
-- Performing Test DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG_OK - Success
-- Test successful, do not define DEAL_II_MEMBER_VAR_SPECIALIZATION_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG
-- Performing Test DEAL_II_EXPLICIT_CONSTRUCTOR_BUG - Failed
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK
-- Performing Test DEAL_II_CONST_MEMBER_DEDUCTION_BUG_OK - Success
-- Test successful, do not define DEAL_II_CONST_MEMBER_DEDUCTION_BUG
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK
-- Performing Test DEAL_II_TYPE_QUALIFIER_BUG_OK - Success
-- Test successful, do not define DEAL_II_TYPE_QUALIFIER_BUG
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK
-- Performing Test DEAL_II_BOOST_BIND_COMPILER_BUG_OK - Success
-- Test successful, do not define DEAL_II_BOOST_BIND_COMPILER_BUG
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK
-- Performing Test DEAL_II_BIND_NO_CONST_OP_PARENTHESES_OK - Success
-- Test successful, do not define DEAL_II_BIND_NO_CONST_OP_PARENTHESES
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK
-- Performing Test DEAL_II_ICC_SFINAE_BUG_OK - Success
-- Test successful, do not define DEAL_II_ICC_SFINAE_BUG
--
-- Include
/home/redclient04/Software/dealii/cmake/checks/check_03_generator_bugs.cmake
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_1_bzip2.cmake
-- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- BZIP2_VERSION: 1.0.6
-- BZIP2_LIBRARIES: /usr/lib64/libbz2.so
-- BZIP2_INCLUDE_DIRS: /usr/include
-- Found BZIP2
-- DEAL_II_WITH_BZIP2 successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_1_lapack.cmake
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- A library with BLAS API found.
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Performing Test gfortran_LIBRARY
-- Performing Test gfortran_LIBRARY - Success
-- Performing Test quadmath_LIBRARY
-- Performing Test quadmath_LIBRARY - Success
-- Performing Test c_LIBRARY
-- Performing Test c_LIBRARY - Success
-- LAPACK_LIBRARIES:
/usr/lib64/liblapack.so;/usr/lib64/libblas.so;/usr/lib64/libblas.so;gfortran;m;quadmath;m;c
-- LAPACK_LINKER_FLAGS:
-- Found LAPACK
-- Performing Test DEAL_II_HAVE_FLAG_pthread
-- Performing Test DEAL_II_HAVE_FLAG_pthread - Success
-- Performing Test LAPACK_SYMBOL_CHECK
-- Performing Test LAPACK_SYMBOL_CHECK - Success
-- DEAL_II_WITH_LAPACK successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_1_mpi.cmake
-- Unable to determine MPI from MPI driver /usr/bin/cc
-- Could NOT find MPI_C (missing: MPI_C_LIBRARIES MPI_C_INCLUDE_PATH)
-- Unable to determine MPI from MPI driver /usr/bin/c++
-- Could NOT find MPI_CXX (missing: MPI_CXX_LIBRARIES MPI_CXX_INCLUDE_PATH)
-- Unable to determine MPI from MPI driver /usr/bin/gfortran
-- Could NOT find MPI_Fortran (missing: MPI_Fortran_LIBRARIES
MPI_Fortran_INCLUDE_PATH)
-- MPI not found but DEAL_II_WITH_MPI is set to TRUE. Try again with more
aggressive search paths:
-- Found MPI_C: /usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- Found MPI_CXX:
/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- Found MPI_Fortran:
/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_usempi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_mpifh.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- Performing Test MPI_HAVE_MPI_SEEK_SET
-- Performing Test MPI_HAVE_MPI_SEEK_SET - Success
-- Found MPI_MPI_H
-- MPI_VERSION: 3.0
-- MPI_LIBRARIES:
/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_usempi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_mpifh.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- MPI_INCLUDE_DIRS:
/usr/lib64/mpi/gcc/openmpi/include;/usr/lib64/mpi/gcc/openmpi/include
-- MPI_USER_INCLUDE_DIRS:
/usr/lib64/mpi/gcc/openmpi/include;/usr/lib64/mpi/gcc/openmpi/include
-- MPI_CXX_FLAGS:
-- MPI_LINKER_FLAGS: -Wl,-rpath -Wl,/usr/lib64/mpi/gcc/openmpi/lib64
-Wl,--enable-new-dtags
-- Found MPI
-- DEAL_II_WITH_MPI successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_1_threads.cmake
-- Found TBB_LIBRARY
-- TBB_DEBUG_LIBRARY not found! Call:
-- FIND_LIBRARY(TBB_DEBUG_LIBRARY NAMES tbb_debug HINTS PATH_SUFFIXES lib
lib64 lib)
-- Found TBB_INCLUDE_DIR
-- TBB_VERSION: 4.4
-- TBB_LIBRARIES: /usr/lib64/libtbb.so
-- TBB_INCLUDE_DIRS: /usr/include
-- TBB_USER_INCLUDE_DIRS: /usr/include
-- Found TBB
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS
-- Performing Test DEAL_II_HAVE_MT_POSIX_BARRIERS - Success
-- DEAL_II_WITH_THREADS successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_1_zlib.cmake
-- Found ZLIB: /home/redclient04/anaconda3/lib/libz.so (found version "1.2.8")
-- ZLIB_VERSION: 1.2.8
-- ZLIB_LIBRARIES: /home/redclient04/anaconda3/lib/libz.so
-- ZLIB_INCLUDE_DIRS: /home/redclient04/anaconda3/include
-- Found ZLIB
-- DEAL_II_WITH_ZLIB successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_2_metis.cmake
-- Found METIS_LIBRARY
-- PARMETIS_LIBRARY not found! Call:
-- FIND_LIBRARY(PARMETIS_LIBRARY NAMES parmetis HINTS /usr/lib64
NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- Found METIS_INCLUDE_DIR
-- METIS_VERSION: 5.1.0
-- METIS_LIBRARIES:
/usr/lib64/libmetis.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- METIS_INCLUDE_DIRS: /usr/include
-- METIS_USER_INCLUDE_DIRS: /usr/include
-- Found METIS
-- DEAL_II_WITH_METIS successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_2_trilinos.cmake
-- Found EPETRA_CONFIG_H
-- Found SACADO_CONFIG_H
-- Found SACADO_CMATH_HPP
-- Performing Test TRILINOS_SUPPORTS_CPP11
-- Performing Test TRILINOS_SUPPORTS_CPP11 - Success
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND
-- Performing Test TRILINOS_HAS_C99_TR1_WORKAROUND - Success
-- Found TRILINOS_LIBRARY_muelu-adapters
-- Found TRILINOS_LIBRARY_muelu-interface
-- Found TRILINOS_LIBRARY_muelu
-- Found TRILINOS_LIBRARY_teko
-- Found TRILINOS_LIBRARY_stratimikos
-- Found TRILINOS_LIBRARY_stratimikosbelos
-- Found TRILINOS_LIBRARY_stratimikosaztecoo
-- Found TRILINOS_LIBRARY_stratimikosamesos
-- Found TRILINOS_LIBRARY_stratimikosml
-- Found TRILINOS_LIBRARY_stratimikosifpack
-- Found TRILINOS_LIBRARY_ifpack2-adapters
-- Found TRILINOS_LIBRARY_ifpack2
-- Found TRILINOS_LIBRARY_anasazitpetra
-- Found TRILINOS_LIBRARY_ModeLaplace
-- Found TRILINOS_LIBRARY_anasaziepetra
-- Found TRILINOS_LIBRARY_anasazi
-- Found TRILINOS_LIBRARY_amesos2
-- Found TRILINOS_LIBRARY_belostpetra
-- Found TRILINOS_LIBRARY_belosepetra
-- Found TRILINOS_LIBRARY_belos
-- Found TRILINOS_LIBRARY_ml
-- Found TRILINOS_LIBRARY_ifpack
-- Found TRILINOS_LIBRARY_zoltan2
-- Found TRILINOS_LIBRARY_pamgen_extras
-- Found TRILINOS_LIBRARY_pamgen
-- Found TRILINOS_LIBRARY_amesos
-- Found TRILINOS_LIBRARY_galeri-xpetra
-- Found TRILINOS_LIBRARY_galeri-epetra
-- Found TRILINOS_LIBRARY_aztecoo
-- Found TRILINOS_LIBRARY_isorropia
-- Found TRILINOS_LIBRARY_xpetra-sup
-- Found TRILINOS_LIBRARY_xpetra
-- Found TRILINOS_LIBRARY_thyratpetra
-- Found TRILINOS_LIBRARY_thyraepetraext
-- Found TRILINOS_LIBRARY_thyraepetra
-- Found TRILINOS_LIBRARY_thyracore
-- Found TRILINOS_LIBRARY_epetraext
-- Found TRILINOS_LIBRARY_tpetraext
-- Found TRILINOS_LIBRARY_tpetrainout
-- Found TRILINOS_LIBRARY_tpetra
-- Found TRILINOS_LIBRARY_kokkostsqr
-- Found TRILINOS_LIBRARY_tpetrakernels
-- Found TRILINOS_LIBRARY_tpetraclassiclinalg
-- Found TRILINOS_LIBRARY_tpetraclassicnodeapi
-- Found TRILINOS_LIBRARY_tpetraclassic
-- Found TRILINOS_LIBRARY_triutils
-- Found TRILINOS_LIBRARY_zoltan
-- Found TRILINOS_LIBRARY_epetra
-- Found TRILINOS_LIBRARY_sacado
-- Found TRILINOS_LIBRARY_rtop
-- Found TRILINOS_LIBRARY_teuchoskokkoscomm
-- Found TRILINOS_LIBRARY_teuchoskokkoscompat
-- Found TRILINOS_LIBRARY_teuchosremainder
-- Found TRILINOS_LIBRARY_teuchosnumerics
-- Found TRILINOS_LIBRARY_teuchoscomm
-- Found TRILINOS_LIBRARY_teuchosparameterlist
-- Found TRILINOS_LIBRARY_teuchoscore
-- Found TRILINOS_LIBRARY_kokkosalgorithms
-- Found TRILINOS_LIBRARY_kokkoscontainers
-- Found TRILINOS_LIBRARY_kokkoscore
-- TRILINOS_VERSION: 12.10.1
-- TRILINOS_LIBRARIES:
/home/redclient04/Software/Trilinos/build/INSTALL/lib/libmuelu-adapters.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libmuelu-interface.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libmuelu.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteko.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikos.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikosbelos.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikosaztecoo.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikosamesos.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikosml.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libstratimikosifpack.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libifpack2-adapters.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libifpack2.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libanasazitpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libModeLaplace.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libanasaziepetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libanasazi.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libamesos2.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libbelostpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libbelosepetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libbelos.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libml.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libifpack.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libzoltan2.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libpamgen_extras.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libpamgen.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libamesos.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libgaleri-xpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libgaleri-epetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libaztecoo.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libisorropia.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libxpetra-sup.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libxpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libthyratpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libthyraepetraext.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libthyraepetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libthyracore.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libepetraext.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetraext.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetrainout.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libkokkostsqr.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetrakernels.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetraclassiclinalg.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetraclassicnodeapi.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtpetraclassic.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libtriutils.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libzoltan.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libepetra.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libsacado.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/librtop.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchoskokkoscomm.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchoskokkoscompat.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchosremainder.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchosnumerics.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchoscomm.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchosparameterlist.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libteuchoscore.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libkokkosalgorithms.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libkokkoscontainers.so;/home/redclient04/Software/Trilinos/build/INSTALL/lib/libkokkoscore.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;/usr/lib64/libdl.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- TRILINOS_INCLUDE_DIRS:
/home/redclient04/Software/Trilinos/build/INSTALL/include
-- TRILINOS_USER_INCLUDE_DIRS:
/home/redclient04/Software/Trilinos/build/INSTALL/include
-- Found TRILINOS
-- Check whether the found trilinos package contains all required modules:
-- Found Amesos
-- Found Epetra
-- Found Ifpack
-- Found AztecOO
-- Found Sacado
-- Found Teuchos
-- Found ML
-- Found MueLu
-- DEAL_II_WITH_TRILINOS successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_2_umfpack.cmake
-- Found UMFPACK_INCLUDE_DIR
-- Found AMD_INCLUDE_DIR
-- Found SuiteSparse_config_INCLUDE_DIR
-- Found UMFPACK_LIBRARY
-- Found AMD_LIBRARY
-- Found CHOLMOD_LIBRARY
-- Found COLAMD_LIBRARY
-- Found CCOLAMD_LIBRARY
-- Found CAMD_LIBRARY
-- Found SuiteSparse_config_LIBRARY
-- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC
-- Performing Test LAPACK_SUITESPARSECONFIG_WITH_PIC - Failed
-- Performing Test rt_LIBRARY
-- Performing Test rt_LIBRARY - Success
-- UMFPACK_VERSION: 5.7.1
-- UMFPACK_LIBRARIES:
/usr/lib64/libumfpack.so;/usr/lib64/libcholmod.so;/usr/lib64/libccolamd.so;/usr/lib64/libcolamd.so;/usr/lib64/libcamd.so;/usr/lib64/libamd.so;/usr/lib64/libmetis.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;rt
-- UMFPACK_INCLUDE_DIRS:
/usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
-- UMFPACK_USER_INCLUDE_DIRS:
/usr/include/suitesparse;/usr/include/suitesparse;/usr/include/suitesparse
-- UMFPACK_LINKER_FLAGS:
-- Found UMFPACK
-- DEAL_II_WITH_UMFPACK successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_3_petsc.cmake
-- Found PETSC_LIBRARY
-- Found PETSC_INCLUDE_DIR_ARCH
-- Found PETSC_INCLUDE_DIR_COMMON
-- Found PETSC_PETSCVARIABLES
-- Found PETSC_LIBRARY_HYPRE
-- Found PETSC_LIBRARY_mpi_cxx
-- Found PETSC_LIBRARY_lapack
-- Found PETSC_LIBRARY_blas
-- Performing Test PETSC_LIBRARY_pthread
-- Performing Test PETSC_LIBRARY_pthread - Success
-- Found PETSC_LIBRARY_ssl
-- Found PETSC_LIBRARY_crypto
-- Performing Test PETSC_LIBRARY_m
-- Performing Test PETSC_LIBRARY_m - Success
-- Found PETSC_LIBRARY_mpi_usempi
-- Found PETSC_LIBRARY_mpi_mpifh
-- Performing Test PETSC_LIBRARY_gfortran
-- Performing Test PETSC_LIBRARY_gfortran - Success
-- Performing Test PETSC_LIBRARY_quadmath
-- Performing Test PETSC_LIBRARY_quadmath - Success
-- Found PETSC_LIBRARY_mpi_cxx
-- Performing Test PETSC_LIBRARY_dl
-- Performing Test PETSC_LIBRARY_dl - Success
-- Found PETSC_LIBRARY_mpi
-- PETSC_VERSION: 3.5.4.0
-- PETSC_LIBRARIES:
/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/lib/libpetsc.so;/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/lib/libHYPRE.a;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;pthread;/home/redclient04/anaconda3/lib/libssl.so;/home/redclient04/anaconda3/lib/libcrypto.so;m;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_usempi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_mpifh.so;gfortran;m;gfortran;m;quadmath;m;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;dl;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so;pthread;dl
-- PETSC_INCLUDE_DIRS:
/home/redclient04/Software/petsc/petsc-3.5.4/include;/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/include;/usr/lib64/mpi/gcc/openmpi/include
-- PETSC_USER_INCLUDE_DIRS:
/home/redclient04/Software/petsc/petsc-3.5.4/include;/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/include;/usr/lib64/mpi/gcc/openmpi/include
-- Found PETSC
-- DEAL_II_WITH_PETSC successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_arpack.cmake
-- Found ARPACK_LIBRARY
-- PARPACK_LIBRARY not found! Call:
-- FIND_LIBRARY(PARPACK_LIBRARY NAMES parpack HINTS /usr/lib64
NO_DEFAULT_PATH NO_CMAKE_ENVIRONMENT_PATH NO_CMAKE_PATH
NO_SYSTEM_ENVIRONMENT_PATH NO_CMAKE_SYSTEM_PATH NO_CMAKE_FIND_ROOT_PATH)
-- ARPACK_LIBRARIES:
/usr/lib64/libarpack.so;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- ARPACK_LINKER_FLAGS:
-- Found ARPACK
-- DEAL_II_WITH_ARPACK successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_boost.cmake
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- iostreams
-- serialization
-- system
-- thread
-- regex
-- chrono
-- date_time
-- atomic
-- BOOST_VERSION: 1.54.0
-- BOOST_LIBRARIES:
/usr/lib64/libboost_iostreams-mt.so;/usr/lib64/libboost_serialization-mt.so;/usr/lib64/libboost_system-mt.so;/usr/lib64/libboost_thread-mt.so;/usr/lib64/libboost_regex-mt.so;/usr/lib64/libboost_chrono-mt.so;/usr/lib64/libboost_date_time-mt.so;/usr/lib64/libboost_atomic-mt.so
-- BOOST_INCLUDE_DIRS: /usr/include
-- BOOST_USER_INCLUDE_DIRS: /usr/include
-- Found BOOST
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs
-- Performing Test DEAL_II_HAVE_FLAG_Wunused_local_typedefs - Success
-- DEAL_II_WITH_BOOST successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_hdf5.cmake
-- Found HDF5_INCLUDE_DIR
-- Found HDF5_LIBRARY
-- Found HDF5_HL_LIBRARY
-- Found HDF5_PUBCONF
-- HDF5_LIBRARIES:
/usr/lib64/mpi/gcc/openmpi/lib64/libhdf5_hl.so;/usr/lib64/mpi/gcc/openmpi/lib64/libhdf5.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- HDF5_INCLUDE_DIRS: /usr/lib64/mpi/gcc/openmpi/include
-- HDF5_USER_INCLUDE_DIRS: /usr/lib64/mpi/gcc/openmpi/include
-- Found HDF5
-- DEAL_II_WITH_HDF5 successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_muparser.cmake
-- Found MUPARSER_LIBRARY
-- Found MUPARSER_INCLUDE_DIR
-- MUPARSER_VERSION: 2.2.5
-- MUPARSER_LIBRARIES: /usr/lib64/libmuparser.so
-- MUPARSER_INCLUDE_DIRS: /usr/include
-- Found MUPARSER
-- DEAL_II_WITH_MUPARSER successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_netcdf.cmake
-- Found NETCDF_INCLUDE_DIR
-- Found NETCDF_CPLUSPLUS_LIBRARY
-- Found NETCDF_C_LIBRARY
-- NETCDF_LIBRARIES: /usr/lib64/libnetcdf_c++.so;/usr/lib64/libnetcdf.so
-- NETCDF_INCLUDE_DIRS: /usr/include
-- Found NETCDF
-- DEAL_II_WITH_NETCDF successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_opencascade.cmake
-- OPENCASCADE_INCLUDE_DIR not found! Call:
-- FIND_PATH(OPENCASCADE_INCLUDE_DIR Standard_Version.hxx HINTS
PATH_SUFFIXES include include/oce inc)
-- OPENCASCADE_TKBO not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBO NAMES TKBO HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBool not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBool NAMES TKBool HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKBRep not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKBRep NAMES TKBRep HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKernel not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKernel NAMES TKernel HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFeat not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFeat NAMES TKFeat HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKFillet not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKFillet NAMES TKFillet HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG2d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG2d NAMES TKG2d HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKG3d not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKG3d NAMES TKG3d HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomAlgo NAMES TKGeomAlgo HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKGeomBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKGeomBase NAMES TKGeomBase HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKHLR not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKHLR NAMES TKHLR HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKIGES not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKIGES NAMES TKIGES HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMath not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMath NAMES TKMath HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKMesh not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKMesh NAMES TKMesh HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKOffset not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKOffset NAMES TKOffset HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKPrim not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKPrim NAMES TKPrim HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKShHealing not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKShHealing NAMES TKShHealing HINTS
PATH_SUFFIXES lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib
lin32/gcc/lib)
-- OPENCASCADE_TKSTEP not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEP NAMES TKSTEP HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPAttr not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPAttr NAMES TKSTEPAttr HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTEPBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTEPBase NAMES TKSTEPBase HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKSTL not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKSTL NAMES TKSTL HINTS PATH_SUFFIXES lib lib64
lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKTopAlgo not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKTopAlgo NAMES TKTopAlgo HINTS PATH_SUFFIXES
lib lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_TKXSBase not found! Call:
-- FIND_LIBRARY(OPENCASCADE_TKXSBase NAMES TKXSBase HINTS PATH_SUFFIXES lib
lib64 lib mac64/clang/lib mac32/clang/lib lin64/gcc/lib lin32/gcc/lib)
-- OPENCASCADE_LIBRARIES: *** Required variable "OPENCASCADE_TKBO" set to
NOTFOUND ***
-- OPENCASCADE_INCLUDE_DIRS: *** Required variable "OPENCASCADE_INCLUDE_DIR"
set to NOTFOUND ***
-- OPENCASCADE_USER_INCLUDE_DIRS: *** Required variable
"OPENCASCADE_INCLUDE_DIR" set to NOTFOUND ***
-- Could NOT find OPENCASCADE
-- DEAL_II_WITH_OPENCASCADE has unmet external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_p4est.cmake
-- Found SC_INCLUDE_DIR
-- Found P4EST_LIBRARY_OPTIMIZED
-- Found SC_LIBRARY_OPTIMIZED
-- Found P4EST_LIBRARY_DEBUG
-- Found SC_LIBRARY_DEBUG
-- Found P4EST_INCLUDE_DIR
-- P4EST_VERSION: 0.3.4.1
-- P4EST_LIBRARIES:
optimized;/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/lib64/libp4est.so;/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/lib64/libsc.so;debug;/usr/lib64/mpi/gcc/openmpi/lib64/libp4est.so;/usr/lib64/mpi/gcc/openmpi/lib64/libsc.so;general;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;gfortran;quadmath;m;c;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so
-- P4EST_INCLUDE_DIRS:
/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/include;/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/include
-- P4EST_USER_INCLUDE_DIRS:
/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/include;/home/redclient04/Software/p4est/p4est-0.3.4.1/DEBUG/include
-- Found P4EST
-- DEAL_II_WITH_P4EST successfully set up with external dependencies.
--
-- Include
/home/redclient04/Software/dealii/cmake/configure/configure_slepc.cmake
-- Found SLEPC_LIBRARY
-- Found SLEPC_INCLUDE_DIR_ARCH
-- Found SLEPC_INCLUDE_DIR_COMMON
-- SLEPC_VERSION: 3.4.3.0
-- SLEPC_LIBRARIES:
/usr/lib64/mpi/gcc/openmpi/lib64/libslepc.so;/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/lib/libpetsc.so;/home/redclient04/Software/petsc/petsc-3.5.4/arch-linux2-c-debug/lib/libHYPRE.a;/usr/lib64/liblapack.so;/usr/lib64/libblas.so;/home/redclient04/anaconda3/lib/libssl.so;/home/redclient04/anaconda3/lib/libcrypto.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_usempi.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_mpifh.so;gfortran;quadmath;m;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi_cxx.so;/usr/lib64/mpi/gcc/openmpi/lib64/libmpi.so;pthread;dl
-- SLEPC_INCLUDE_DIRS:
/usr/lib64/mpi/gcc/openmpi/include;/usr/lib64/mpi/gcc/openmpi/include
-- SLEPC_USER_INCLUDE_DIRS:
/usr/lib64/mpi/gcc/openmpi/include;/usr/lib64/mpi/gcc/openmpi/include
-- Found SLEPC
-- Could not find a sufficient SLEPc installation: The SLEPc library must have
the same version as the PETSc library.
-- DEAL_II_WITH_SLEPC has unmet external dependencies.
--
-- Include /home/redclient04/Software/dealii/cmake/setup_cpack.cmake
--
-- Include /home/redclient04/Software/dealii/cmake/setup_custom_targets.cmake
--
-- Include /home/redclient04/Software/dealii/cmake/setup_finalize.cmake
--
-- Include /home/redclient04/Software/dealii/cmake/setup_write_config.cmake
-- Query git repository information.
-- Found Git: /usr/bin/git (found version "2.10.2")
--
-- Configuring done. Proceed to target definitions now.
-- Setting up bundled features
-- Setting up bundled features - Done
-- Setting up library
-- Setting up library - Done
-- Setting up project configuration
-- Setting up project configuration - Done
-- Setting up examples
-- Setting up examples - Done
-- Setting up quick_tests in DEBUG mode
-- Setting up quick_tests in DEBUG mode - Done
-- Setting up testsuite
-- Setting up testsuite - Done
###
#
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX: /home/redclient04/Software/INSTALL
# CMAKE_SOURCE_DIR: /home/redclient04/Software/dealii
# (version 8.4.2, shortrev 0752c81)
# CMAKE_BINARY_DIR: /home/redclient04/Software/dealii/build5
# CMAKE_CXX_COMPILER: GNU 4.8.5 on platform Linux x86_64
# /usr/bin/c++
#
# Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION
= ON):
# ( DEAL_II_WITH_64BIT_INDICES = OFF )
# DEAL_II_WITH_ARPACK set up with external dependencies
# DEAL_II_WITH_BOOST set up with external dependencies
# DEAL_II_WITH_BZIP2 set up with external dependencies
# DEAL_II_WITH_CXX11 = ON
# ( DEAL_II_WITH_CXX14 = OFF )
# DEAL_II_WITH_HDF5 set up with external dependencies
# DEAL_II_WITH_LAPACK set up with external dependencies
# DEAL_II_WITH_METIS set up with external dependencies
# DEAL_II_WITH_MPI set up with external dependencies
# DEAL_II_WITH_MUPARSER set up with external dependencies
# DEAL_II_WITH_NETCDF set up with external dependencies
# ( DEAL_II_WITH_OPENCASCADE = OFF )
# DEAL_II_WITH_P4EST set up with external dependencies
# DEAL_II_WITH_PETSC set up with external dependencies
# ( DEAL_II_WITH_SLEPC = OFF )
# DEAL_II_WITH_THREADS set up with external dependencies
# DEAL_II_WITH_TRILINOS set up with external dependencies
# DEAL_II_WITH_UMFPACK set up with external dependencies
# DEAL_II_WITH_ZLIB set up with external dependencies
#
# Component configuration:
# ( DEAL_II_COMPONENT_DOCUMENTATION = OFF )
# DEAL_II_COMPONENT_EXAMPLES
# ( DEAL_II_COMPONENT_PACKAGE = OFF )
# ( DEAL_II_COMPONENT_PARAMETER_GUI = OFF )
#
# Detailed information (compiler flags, feature configuration) can be found in
detailed.log
#
# Run $ make info to print a help message with a list of top level targets
#
###
-- Configuring done
-- Generating done
-- Build files have been written to: /home/redclient04/Software/dealii/build5
