@Jane
If you need to get it going soon, try
following https://github.com/dealii/dealii/wiki/deal.II-in-Spack
Roughly it's only 3 steps (assuming that you have XCode and command-line
tools):
1. install gcc with spack
2. configure gfortran to be used with
clang
http://spack.readthedocs.io/en/latest/getting_started.html#mixed-toolchains
3. install dealii
Let me know if you have issues, I am running this setup on the latest
XCode/ Apple's clang without issues.
@Daniel
It's used from the pre-build app by Luca
Denis.
On Tuesday, April 24, 2018 at 5:36:21 PM UTC+2, Daniel Arndt wrote:
>
> Jane,
>
> this looks like you are using a compiler (clang on macOS?) that doesn't
> define std::auto_ptr anymore and the used boost library doesn't detect this.
> A recent developer version (there will soon be a release) should
> circumvent the problem.
> How did you install deal.II? Are you using spack directly or a
> pre-compiled package?
> If you are using spack directly you should just rerun it to get a recent
> developer version.
>
> Best,
> Daniel
>
>
> Am Dienstag, 24. April 2018 16:14:51 UTC+2 schrieb Jane Lee:
>>
>> Hi all,
>> I'm unfortunately not very good with computers and the nitty gritty
>> details of the things that go on behind the program.
>> I'm running dealii-9.0 instead of 8.5.1 because i did a system update and
>> 8.5.1 wasn't working.
>> I stupidly did a minor update forgetting that i had issues after updates
>> previously, and the same code which i was running fine just before the
>> update and restart is now not working when 'make run' is done.
>> The error is a bit too complicated for me to understand...
>> can anyone help? Am desperate to get things up and running
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/convergence_table.h:21:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/table_handler.h:31:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/serialization/map.hpp:24:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/basic_iarchive.hpp:23:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/scoped_ptr.hpp:14:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/scoped_ptr.hpp:74:31:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_NOEXCEPT : px(
>> p.release() )
>>
>> * ~~~~~^*
>>
>> In file included from
>> /Users/janelee/Documents/fullmodel/full_solver/final/stokes.cc:7:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/convergence_table.h:21:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/table_handler.h:31:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/serialization/map.hpp:24:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/basic_iarchive.hpp:28:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/helper_collection.hpp:27:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:28:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/detail/shared_count.hpp:402:33:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> explicit shared_count( std::auto_ptr<Y> & r ): pi_( new
>> sp_counted_i...
>>
>> * ~~~~~^*
>>
>> In file included from
>> /Users/janelee/Documents/fullmodel/full_solver/final/stokes.cc:7:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/convergence_table.h:21:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/table_handler.h:31:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/serialization/map.hpp:24:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/basic_iarchive.hpp:28:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/helper_collection.hpp:27:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:255:65:
>>
>> **error: *
>>
>> * no member named 'auto_ptr' in namespace 'std'*
>>
>> template< class T, class R > struct sp_enable_if_auto_ptr<
>> std::auto_ptr...
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:255:75:
>>
>> **error: *
>>
>> * 'T' does not refer to a value*
>>
>> ...class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T
>> >, R >
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:255:17:
>>
>> **note: *
>>
>> declared here
>>
>> template< class T, class R > struct sp_enable_if_auto_ptr<
>> std::auto_ptr...
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:255:81:
>>
>> **error: *
>>
>> * expected ';' at end of declaration*
>>
>> ...class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T
>> >, R >
>>
>> *
>> ^*
>>
>>
>> ;
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:255:82:
>>
>> **error: *
>>
>> * expected unqualified-id*
>>
>> ...class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T
>> >, R >
>>
>> *
>> ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:454:31:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:467:22:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:544:34:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> shared_ptr & operator=( std::auto_ptr<Y> & r )
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:553:34:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> shared_ptr & operator=( std::auto_ptr<Y> && r )
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/smart_ptr/shared_ptr.hpp:555:38:
>>
>> **error: *
>>
>> * no template named 'auto_ptr' in namespace 'std'*
>>
>> this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this
>> );
>>
>> * ~~~~~^*
>>
>> In file included from
>> /Users/janelee/Documents/fullmodel/full_solver/final/stokes.cc:7:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/convergence_table.h:21:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/base/table_handler.h:31:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/serialization/map.hpp:24:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/archive/detail/basic_iarchive.hpp:63:16:
>>
>> **error: *
>>
>> * non-const lvalue reference to type*
>>
>> * 'boost::archive::detail::helper_collection' cannot bind to a value
>> of*
>>
>> * unrelated type 'boost::archive::detail::basic_iarchive'*
>>
>> return *this;
>>
>> * ^~~~~*
>>
>> In file included from
>> /Users/janelee/Documents/fullmodel/full_solver/final/stokes.cc:12:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/grid/tria.h:30:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2.hpp:19:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/signal.hpp:18:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/function.hpp:24:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/function/detail/prologue.hpp:18:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/mem_fn.hpp:22:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/bind/mem_fn.hpp:25:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:23:
>>
>> **error: *
>>
>> * redefinition of 'get_pointer' as different kind of symbol*
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:20:23:
>>
>> **note: *
>>
>> previous definition is here
>>
>> template<class T> T * get_pointer(T * p)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:40:
>>
>> **error: *
>>
>> * no member named 'auto_ptr' in namespace 'std'*
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ~~~~~^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:49:
>>
>> **error: *
>>
>> * 'T' does not refer to a value*
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:16:
>>
>> **note: *
>>
>> declared here
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:52:
>>
>> **error: *
>>
>> * expected expression*
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:48:61:
>>
>> **error: *
>>
>> * expected ';' at end of declaration*
>>
>> template<class T> T * get_pointer(std::auto_ptr<T> const& p)
>>
>> * ^*
>>
>> ;
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/get_pointer.hpp:49:1:
>>
>> **error: *
>>
>> * expected unqualified-id*
>>
>> {
>>
>> *^*
>>
>> In file included from
>> /Users/janelee/Documents/fullmodel/full_solver/final/stokes.cc:12:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/include/deal.II/grid/tria.h:30:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2.hpp:19:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/signal.hpp:22:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/connection.hpp:24:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/slot.hpp:22:
>>
>> In file included from
>> /Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/detail/tracked_objects_visitor.hpp:18:
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/signals2/slot_base.hpp:100:36:
>>
>> **error: *
>>
>> * no viable conversion from 'shared_ptr<void>' to*
>>
>> *
>> 'std::__1::vector<boost::variant<boost::weak_ptr<boost::signals2::detail::trackable_pointee>,*
>>
>> * boost::weak_ptr<void>,
>> boost::signals2::detail::foreign_void_weak_ptr>,*
>>
>> *
>> std::__1::allocator<boost::variant<boost::weak_ptr<boost::signals2::detail::trackable_pointee>,*
>>
>> * boost::weak_ptr<void>,
>> boost::signals2::detail::foreign_void_weak_ptr> >*
>>
>> * >::value_type' (aka*
>>
>> *
>> 'boost::variant<boost::weak_ptr<boost::signals2::detail::trackable_pointee>,*
>>
>> * boost::weak_ptr<void>,
>> boost::signals2::detail::foreign_void_weak_ptr>')*
>>
>> _tracked_objects.push_back(signal.lock_pimpl());
>>
>> * ^~~~~~~~~~~~~~~~~~~*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/variant/variant.hpp:1782:5:
>>
>> **note: *
>>
>> candidate constructor [with T = boost::shared_ptr<void>]
>>
>> variant(T&& operand,
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/variant/variant.hpp:1758:5:
>>
>> **note: *
>>
>> candidate constructor [with T = boost::shared_ptr<void>]
>>
>> variant(const T& operand,
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/variant/variant.hpp:1768:5:
>>
>> **note: *
>>
>> candidate constructor [with T = boost::shared_ptr<void>] not
>> viable:
>>
>> expects an l-value for 1st argument
>>
>> variant(
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/variant/variant.hpp:1797:5:
>>
>> **note: *
>>
>> candidate constructor not viable: no known conversion from
>>
>> 'shared_ptr<void>' to 'const
>>
>>
>> boost::variant<boost::weak_ptr<boost::signals2::detail::trackable_pointee>,
>>
>> boost::weak_ptr<void>,
>> boost::signals2::detail::foreign_void_weak_ptr> &'
>>
>> for 1st argument
>>
>> variant(const variant& operand)
>>
>> * ^*
>>
>> */Applications/deal.II-9.0-spack.app/Contents/Resources/spack/view/include/boost/variant/variant.hpp:1808:5:
>>
>> **note: *
>>
>> candidate constructor not viable: no known conversion from
>>
>> 'shared_ptr<void>' to
>>
>>
>> 'boost::variant<boost::weak_ptr<boost::signals2::detail::trackable_pointee>,
>>
>> boost::weak_ptr<void>,
>> boost::signals2::detail::foreign_void_weak_ptr> &&'
>>
>> for 1st argument
>>
>> variant(variant&& operand)
>> BOOST_NOEXCEPT_IF(variant_move_noexcept_c...
>>
>> * ^*
>>
>> */Library/Developer/CommandLineTools/usr/include/c++/v1/vector:680:59: *
>> *note: *
>>
>> passing argument to parameter '__x' here
>>
>> _LIBCPP_INLINE_VISIBILITY void push_back(value_type&& __x);
>>
>> * ^*
>>
>> *fatal error: *too many errors emitted, stopping now [-ferror-limit=]
>>
>> 20 errors generated.
>>
>
--
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For mailing list/forum options, see
https://groups.google.com/d/forum/dealii?hl=en
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