Dear Wolfgang,
Thanks for your advice, and Matthias's. Thank you very much!
>
>
> I don't think any of us has seen this error before. Can you try what
> happens if you delete the build directory, re-create it, and then just
> use the minimal command line
> cmake /vol7/...
> ? Make things as simple as possible if you don't know what causes a
> particular problem. If the problem goes away, then repeat by adding one
> flag at a time until the problem re-appears -- at which time you know
> what change must have caused it.
>
I download a new dealii-9.0.1.tar.gz and build a new file folder:
/vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/
source directory:/vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/src
and the command line :(in the directory:
/vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/src/build)
$ cmake /vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/src
$ make -j2
and it shows:
In file included from
/vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/src/source/base/flow_function.cc:18:0:
/vol7/home/zhaoyucan1016/reinstall2-dealii-9.0.1/src/include/deal.II/base/flow_function.h:59:13:
internal compiler error: in use_thunk, at cp/method.c:338
virtual ~FlowFunction() = default;
^
0x595884 use_thunk(tree_node*, bool)
../.././gcc/cp/method.c:338
0x5a078c emit_associated_thunks(tree_node*)
../.././gcc/cp/semantics.c:3763
0x5a0a47 expand_or_defer_fn(tree_node*)
../.././gcc/cp/semantics.c:3890
0x5b83a5 maybe_clone_body(tree_node*)
../.././gcc/cp/optimize.c:428
0x5a083d expand_or_defer_fn_1(tree_node*)
../.././gcc/cp/semantics.c:3814
0x5a0a18 expand_or_defer_fn(tree_node*)
../.././gcc/cp/semantics.c:3884
0x5969ef synthesize_method(tree_node*)
../.././gcc/cp/method.c:809
0x5434aa mark_used(tree_node*)
../.././gcc/cp/decl2.c:4677
0x4f01cc build_over_call
../.././gcc/cp/call.c:7055
0x4ed678 build_new_method_call_1
../.././gcc/cp/call.c:7715
0x4ed678 build_new_method_call(tree_node*, tree_node*, vec<tree_node*,
va_gc, vl_embed>**, tree_node*, int, tree_node**, int)
../.././gcc/cp/call.c:7785
0x4edf1e build_special_member_call(tree_node*, tree_node*, vec<tree_node*,
va_gc, vl_embed>**, tree_node*, int, int)
../.././gcc/cp/call.c:7352
0x58e0ff expand_cleanup_for_base
../.././gcc/cp/init.c:1217
0x5925f1 expand_cleanup_for_base
../.././gcc/cp/init.c:1112
0x5925f1 emit_mem_initializers(tree_node*)
../.././gcc/cp/init.c:1097
0x56a47c cp_parser_mem_initializer_list
../.././gcc/cp/parser.c:11731
0x56a47c cp_parser_ctor_initializer_opt
../.././gcc/cp/parser.c:11642
0x56a47c cp_parser_ctor_initializer_opt_and_function_body
../.././gcc/cp/parser.c:17848
0x56aacf cp_parser_function_definition_after_declarator
../.././gcc/cp/parser.c:21843
0x56b6e3 cp_parser_function_definition_from_specifiers_and_declarator
../.././gcc/cp/parser.c:21764
Please submit a full bug report,
with preprocessed source if appropriate.
Please include the complete backtrace with any bug report.
See <http://gcc.gnu.org/bugs.html> for instructions.
make[2]: *** [source/base/CMakeFiles/obj_base_debug.dir/flow_function.cc.o]
Error 1
make[1]: *** [source/base/CMakeFiles/obj_base_debug.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_ilu.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_matrix_ez.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_mic.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_vanka.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparsity_pattern.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparsity_tools.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/swappable_vector.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/tridiagonal_matrix.cc.o
[ 42%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/vector.cc.o
[ 43%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/vector_memory.cc.o
[ 43%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/vector_view.cc.o
[ 43%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_matrix.cc.o
[ 43%] Building CXX object
source/lac/CMakeFiles/obj_lac_debug.dir/sparse_matrix_inst2.cc.o
[ 43%] Built target obj_lac_debug
make: *** [all] Error 2
and I download a new dealii-9.0.1.tar.gz and build a new file
folder: /vol7/home/zhaoyucan1016/reinstall-dealii-9.0.1
source directory:/vol7/home/zhaoyucan1016/reinstall-dealii-9.0.1/src
and the command line :(in the directory:
/vol7/home/zhaoyucan1016/reinstall-dealii-9.0.1/src/build)
$ cmake /vol7/home/zhaoyucan1016/reinstall-dealii-9.0.1/src
-DCMAKE_INSTALL_PREFIX=/vol7/home/zhaoyucan1016/reinstall-dealii-9.0.1/deal.II
-DDEAL_II_WITH_MPI=ON -DMPI_DIR=/usr/local/mpi3
-DCMAKE_CXX_COMPILER=/usr/local/mpi3/bin/mpicxx
-DCMAKE_Fortran_COMPILER=/usr/local/mpi3/bin/mpifort
-DDEAL_II_FORCE_BUNDLED_BOOST=ON -DDEAL_II_ALLOW_AUTODETECTION=ON
$make -j2 deal_II
$make install
and it shows:
[ 81%] Built target obj_multigrid_release
[ 82%] Built target obj_distributed_release
[ 82%] Built target obj_algorithms_release
[ 82%] Built target obj_matrix_free_release
[ 83%] Built target obj_meshworker_release
[ 84%] Built target obj_opencascade_release
[ 84%] Built target obj_differentiation_ad_release
[ 84%] Built target obj_particle_release
[ 84%] Built target obj_physics_release
[ 84%] Built target obj_physics_elasticity_release
[ 84%] Built target deal_II.g
[ 85%] Built target obj_non_matching_release
[ 85%] Built target obj_rol_release
[ 85%] Built target obj_rol_debug
Scanning dependencies of target step-7.debug
Scanning dependencies of target step-6.debug
[ 85%] Building CXX object
examples/CMakeFiles/step-7.debug.dir/step-7/step-7.cc.o
[ 85%] Building CXX object
examples/CMakeFiles/step-6.debug.dir/step-6/step-6.cc.o
[ 85%] Linking CXX executable ../bin/step-7.debug
[ 85%] Linking CXX executable ../bin/step-6.debug
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<3, 3>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<2, 3>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<1, 1>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<1, 2>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<2, 2>::StraightBoundary()'
make[2]: *** [bin/step-6.debug] Error 1
make[1]: *** [examples/CMakeFiles/step-6.debug.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<3, 3>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<2, 3>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<1, 1>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<1, 2>::StraightBoundary()'
../lib/libdeal_II.g.so.9.0.1: undefined reference to
`dealii::StraightBoundary<2, 2>::StraightBoundary()'
make[2]: *** [bin/step-7.debug] Error 1
make[1]: *** [examples/CMakeFiles/step-7.debug.dir/all] Error 2
make: *** [all] Error 2
And I don't know why this happens. I use dealii-8.5.1 before, and I
finished my test code using block sparse matrix and block vector like
step-20 with fewer dofs. Now I need to try these codes with larger dofs
more than 200K dofs in each loop, and the time steps are more than 50000.
So I want to rewrite the codes and use method for parallel like step-40,
step-55, step-32. So I need to reinstall my dealii. And I start again. But
it seems not so easy.
Best
W. pack the )
>
>
> --
> ------------------------------------------------------------------------
> Wolfgang Bangerth email: bang...@colostate.edu
> <javascript:>
> www: http://www.math.colostate.edu/~bangerth/
>
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