In the documentation of the 9.0.0 package, this is what is installed via spack:
==> 60 installed packages.
-- darwin-highsierra-x86_64 / clang@6.0.0 -----------------------
adol-c@develop gmp@6.1.2 matio@1.5.9
ninja@1.8.2 readline@7.0
arpack-ng@3.6.3 gmsh@4.0.0 metis@5.1.0
numdiff@5.9.0 slepc@3.9.2
assimp@4.0.1 gsl@2.3 mpc@1.1.0 oce@0.18.3
sqlite@3.23.1
autoconf@2.69 hdf5@1.10.3 mpfr@4.0.1
openblas@0.3.3 suite-sparse@5.3.0
automake@1.16.1 hwloc@1.11.9 mumps@5.1.1
openmpi@3.1.2 sundials@3.2.0
boost@1.68.0 hypre@2.14.0 muparser@2.2.5
openssl@1.0.2o superlu-dist@5.2.2
bzip2@1.0.6 intel-tbb@2019 nanoflann@1.2.3 p4est@2.0
superlu-mt@3.1
cmake@3.12.2 isl@0.19 ncurses@6.1
parmetis@4.0.3 tcl@8.6.8
environment-modules@3.2.10 libsigsegv@2.11 netcdf@4.6.1
perl@5.26.2 tetgen@1.5.0
gcc@8.2.0 libtool@2.4.6 netcdf-cxx@4.2
petsc@3.9.2 trilinos@12.12.1
gdbm@1.14.1 libxml2@2.9.8 netgen@5.3.1
pkgconf@1.4.2 xz@5.2.4
glm@0.9.7.1 m4@1.4.18 netlib-scalapack@2.0.2
python@2.7.15 zlib@1.2.11
and includes environment-modules@3.2.10 (i.e., the module command).
Also, the library is installed in
# deal.II configuration:
# CMAKE_BUILD_TYPE: DebugRelease
# BUILD_SHARED_LIBS: ON
# CMAKE_INSTALL_PREFIX:
/Applications/deal.II-9.0.0.app/Contents/Resources
# CMAKE_SOURCE_DIR:
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/src/dealii-v9.0.0
# (version 9.0.0)
# CMAKE_BINARY_DIR: /Users/heltai/dealii/build-pack-deal.II-9.0.0
# CMAKE_CXX_COMPILER: Clang 6.0.0 on platform Darwin x86_64
#
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin/mpicxx
Can you try to configure step-1 indicating the paths that you see here directly?
export DEAL_II_DIR=/Applications/deal.II-9.0.0.app/Contents/Resources
Notice that you should have accesso to all libraries and binaries also in
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/lib
and
/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/bin
That is, you can force cmake to look there by adding as option
CMAKE_PREFIX_PATH=/Applications/deal.II-9.0.0.app/Contents/Resources/spack/view/
What happens if you try to configure and run step-1 after setting DEAL_II_DIR
manually?
L.
> On 22 Sep 2020, at 15:15, Scott Ziegler <scott...@rams.colostate.edu> wrote:
>
> I'm using version 9.0.0 of deal.ii. I have an older MacBook and it won't
> update past iOS 10.13.6. I downloaded the .dmg file and opened it/moved it
> into my applications but I haven't done anything else besides try to run the
> first example.
>
> On Tuesday, September 22, 2020 at 6:05:23 AM UTC-6 luca....@gmail.com wrote:
> If he’s running from the deal.II terminal, he should have the module command
> (it is part of the spack installation).
>
> The deal.II terminal exports the paths so that the module command is there.
> What version of the deal.II package is he using? On my system, this is the
> output I get:
>
>
>
> bash-3.2$ module avail
> -------
> /Applications/deal.II.app/Contents/Resources/spack/share/spack/modules/darwin-catalina-x86_64
> --------
> adol-c/2.7.2 hwloc/1.11.11 numdiff/5.9.0 xz/5.2.5
> arpack-ng/3.7.0-openblas hypre/2.18.2-openblas oce/0.18.3 zlib/1.2.11
> assimp/4.0.1 intel-tbb/2020.2 openblas/0.3.10
> autoconf-archive/2019.01.06 libc/1.0 openmpi/3.1.6
> autoconf/2.69 libffi/3.3 openssl/1.1.1g
> automake/1.16.2 libsigsegv/2.12 p4est/2.2
> boost/1.73.0 libtool/2.4.6 parmetis/4.0.3
> bzip2/1.0.8 libxml2/2.9.10 perl/5.18.4
> cmake/3.17.1 m4/1.4.18 petsc/3.13.1-openblas-py2-py3
> dealii/9.2.0-openblas-py2-py3 matio/1.5.13 pkgconf/1.7.3
> diffutils/3.7 metis/5.1.0 python/3.7.7
> environment-modules/4.5.1 mpc/1.1.0 readline/8.0
> expat/2.2.9 mpfr/4.0.2 slepc/3.13.3-openblas-py2-py3
> gdbm/1.18.1 mumps/5.2.0-openblas sqlite/3.31.1
> gettext/0.20.2 muparser/2.2.6.1 suite-sparse/5.3.0-openblas
> ginkgo/1.1.0 nanoflann/1.2.3 sundials/3.2.1
> glm/0.9.7.1 ncurses/6.2 superlu-dist/6.3.0-openblas
> gmp/6.1.2 netcdf-c/4.7.3 symengine/0.6.0
> gmsh/4.5.4-openblas netcdf-cxx/4.2 tar/1.32
> googletest/1.10.0 netgen/5.3.1 tcl/8.6.8
> gsl/2.5 netlib-scalapack/2.0.2-openblas tetgen/1.5.0
> hdf5/1.10.6 ninja/1.10.0-py2-py3 trilinos/12.18.1-openblas
> bash-3.2$
>
>
>
> > On 21 Sep 2020, at 22:51, Wolfgang Bangerth <bang...@colostate.edu> wrote:
> >
> >
> > Hi Luca,
> >
> >> Are you running the terminal, or the deal.II application?
> >> When you run the deal.II application, you are dropped into a terminal
> >> (with instructions) to run deal.II examples. Including how to set up your
> >> bashrc (or zshrc) to point to the deal.II
> >> Installation/the module command.
> >
> > He's running in the terminal that shows all of the instructions. The
> > problem is not that 'module load dealii' doesn't know how to load deal.II,
> > but that the 'module' command doesn't seem to exist on his system. That's
> > what the error message says:
> > bash: module: command not found
> >
> > I can't seem to find any information (but also don't know where to look) on
> > how one can install the 'module' command or, more generally, which general
> > package 'module' would actually come from.
> >
> > Any ideas?
> >
> > Best
> > W.
> >
> > --
> > ------------------------------------------------------------------------
> > Wolfgang Bangerth email: bang...@colostate.edu
> > www: http://www.math.colostate.edu/~bangerth/
> >
> > --
> > The deal.II project is located at http://www.dealii.org/
> > For mailing list/forum options, see
> > https://groups.google.com/d/forum/dealii?hl=en
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> > To view this discussion on the web visit
> > https://groups.google.com/d/msgid/dealii/98392d90-dbd8-8213-26f8-6a0c3c844623%40colostate.edu.
> >
>
>
> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
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--
The deal.II project is located at http://www.dealii.org/
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